RNA id: CI01000027_05071693_05072917.mRNA



Basic Information


Item Value
RNA id CI01000027_05071693_05072917.mRNA
length 582
RNA type mRNA
GC content 0.40
exon number 4
gene id CI01000027_05071693_05072917
representative False

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5071693 ~ 5073136 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGATGGTTGCTGCATGTGCTGCTGAACCAAAAACCACCATGCTGTTGAACTTATCTGAACGTGAATTGATACAAATACAGCATTGCTGGAGCAAGTCGGCACTCTTCAAAGAAAACACAGAACCAAAGACAACCTCATCGCAAAAGCCTCAGAAAAACAACAACAATGCTGGACTTCTTGAAAGAGCACAGCAGGTGTACAGGGACACAAAGACTAAAGTTCTAAATGTTGGCAGCACAGTGGCTGGTTTTGCTGGCATGTACTATGAGGAACATCTCAAACCTGTAGCTGACTCTTACATGGAGTGGGCTAAAGATGGTGCAAGCTCCCTTTGGGAGAAGCTGAAAAGCAAAGTGCCCACCTTCAGATCAACCCAAGATGAATAAGCAGAACAGACCTTCAAGGACGATCAAACCACATATAAGTTTTAAGTATACTGATATTGTGGATATTAATACCTCCAATGTAGTCATTTCATTGCAATAATGCAAATATGACTTAACGTAAAAAGAGAAAGTGCAACTAAACTGTGCAACTAGAAAGAAGAAGAAAGAAGAATGTTTCCTTTTAACACCAAACTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU159883 lncRNA upstream 32206 5039241 ~ 5039487 (+) True G140674
TU159881 lncRNA upstream 32895 5038545 ~ 5038798 (+) True G140672
TU159632 lncRNA upstream 80146 4975727 ~ 4991547 (+) True G140437
TU159877 lncRNA upstream 84770 4986181 ~ 4986923 (+) True CI01000027_04978217_04987503
TU159852 lncRNA upstream 185875 4885619 ~ 4885818 (+) True G140645
TU159893 lncRNA downstream 29279 5102391 ~ 5108232 (+) True G140683
TU159895 lncRNA downstream 36707 5109819 ~ 5114502 (+) True G140685
TU159894 lncRNA downstream 45356 5118468 ~ 5164862 (+) True G140684
TU159890 lncRNA downstream 124514 5197626 ~ 5201086 (+) True G140680
TU159946 lncRNA downstream 130084 5203196 ~ 5203505 (+) True G140734
CI01000027_05069310_05070638.mRNA mRNA upstream 1041 5067917 ~ 5070652 (+) False CI01000027_05069310_05070638
CI01000027_05061061_05063086.mRNA mRNA upstream 8279 5059739 ~ 5063414 (+) True CI01000027_05061061_05063086
CI01000027_05050310_05055447.mRNA mRNA upstream 15938 5050310 ~ 5055755 (+) False CI01000027_05050310_05055447
CI01000027_05018992_05033275.mRNA mRNA upstream 37403 5018260 ~ 5034290 (+) True CI01000027_05018992_05033275
CI01000027_04978217_04987503.mRNA mRNA upstream 84190 4978217 ~ 4987503 (+) False CI01000027_04978217_04987503
CI01000027_05074328_05075547.mRNA mRNA downstream 1216 5074328 ~ 5075740 (+) True CI01000027_05074328_05075547
CI01000027_05082223_05082843.mRNA mRNA downstream 8504 5081616 ~ 5083193 (+) True CI01000027_05082223_05082843
CI01000027_05157946_05159188.mRNA mRNA downstream 83021 5156133 ~ 5159246 (+) True CI01000027_05157946_05159188
CI01000027_05205628_05209568.mRNA mRNA downstream 131975 5205087 ~ 5210170 (+) True CI01000027_05205628_05209568
CI01000027_05272101_05283619.mRNA mRNA downstream 197219 5270331 ~ 5283941 (+) True CI01000027_05272101_05283619
TU159886 other upstream 825 5069352 ~ 5070868 (+) True CI01000027_05069310_05070638
TU159892 other upstream 15754 5048923 ~ 5055939 (+) True G140682
TU159641 other upstream 286033 4780417 ~ 4785660 (+) False G140440
TU159637 other upstream 287289 4780417 ~ 4784404 (+) False G140440
TU160081 other downstream 639500 5712612 ~ 5712702 (+) True G140862
TU160140 other downstream 683870 5757776 ~ 5757799 (+) True G140921
TU160143 other downstream 890094 5963206 ~ 5965326 (+) True G140924
TU160291 other downstream 1198255 6271367 ~ 6271600 (+) True G141052
TU160305 other downstream 1633265 6707174 ~ 6710632 (+) True G141061

Expression Profile