RNA id: CI01000027_05711573_05714490.mRNA



Basic Information


Item Value
RNA id CI01000027_05711573_05714490.mRNA
length 989
RNA type mRNA
GC content 0.44
exon number 4
gene id CI01000027_05711573_05714490
representative False

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5711477 ~ 5714573 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTTTAAAGAAGGAGAAGATGTTCCCCTCAGGAGGAAGGACACTGGTTTTAGAGGAAAGAATAGAGTGTCAGTTATGGAAAAAGTCATTTTAAAGAAATGAAGATCTTCAATCGAGAGAAAAAGGATCCAGTGGTAGAAGACAGTGATGAGAAAATCAATGCCAACAATGCTACTTTACCTGAGAGTGATTCATCTGACTCCTCATCGGGTGAAAAACAAAAACATTTAAATGAGGCACAGGAAGATGATTTGCAAGTACAGGAAGTTGAGGGGGACTGGGAGTGTGTTGAATGTGCTTGCAGTGCAGATGATAAAATCATTGGAGGTTATGAATGTTCGCCCAACTCCCAGCCCTGGCAAGTCTACCTTACTTATGATAATGGGCAACGCTGGTGTGGAGCATCTCTGATTAATGAAAGATGGGTTGTTTCTGCTGCTCATTGCTACGTTTCAGCTTCTCGTCTTACTGTCCACTTGGGAGAGCACAATGTGTACATTGAAGAAGGCACAGAGCAGAGGATCGGGGCAGAGAAAGTGATTCCTCACCCGAAATACAGTGATTTTACATATAACAATGATTTCATGCTGATCAAGCTGAAGGAGCCTGCCATCTTTAACCAGTATGTGCAGCCAATCTCTCTGGCGACCAGTTGCTCTTCTGCAGGGGAGCAGTGCTTGGTTTCTGGATGGGGCAATCAGATCACCACTGGAGTTGACTATGCTTCTGTGCTGCAGTCTTTTCCTAACTATTCTCAGGGTGATTCTGGCGGTCCTGTGGTGTGCAATGGGGAACTGCGAGGAGTTGTTTCCTGGGGTTATGGCTGTGCTCAGCCTGGCTATCCTGGGGTTTATGCTGAGGTTTGCCGCTACACTGACTGGGTCGAGTCCACCATAGCTAACAATTAGTTGTTTGTTCAGTCGAGTTGGTCCTTTTGATTACAAATTAAAATTTTTCTGAAATATCTGTGATTAAATTTAGCTTTGAACAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU160077 lncRNA upstream 30018 5619656 ~ 5681459 (+) True G140858
TU160171 lncRNA upstream 101299 5609873 ~ 5610178 (+) True G140946
TU160139 lncRNA upstream 103362 5602529 ~ 5608115 (+) True G140920
TU160148 lncRNA upstream 143824 5566567 ~ 5567653 (+) True G140929
TU160120 lncRNA upstream 145007 5560351 ~ 5566470 (+) True CI01000027_05563090_05579132
TU160113 lncRNA downstream 35658 5750231 ~ 5753375 (+) True G140894
TU160175 lncRNA downstream 107237 5821810 ~ 5822331 (+) True G140950
TU160088 lncRNA downstream 192223 5906796 ~ 5911149 (+) True G140869
TU160112 lncRNA downstream 243716 5958289 ~ 5959908 (+) True G140893
TU160094 lncRNA downstream 299116 6013689 ~ 6017411 (+) True G140875
CI01000027_05701396_05711410.mRNA mRNA upstream 17 5700876 ~ 5711460 (+) True CI01000027_05701396_05711410
CI01000027_05691123_05698421.mRNA mRNA upstream 12857 5691017 ~ 5698620 (+) True CI01000027_05691123_05698421
CI01000027_05684713_05689894.mRNA mRNA upstream 21561 5684595 ~ 5689916 (+) True CI01000027_05684713_05689894
CI01000027_05675953_05678901.mRNA mRNA upstream 32427 5675145 ~ 5679050 (+) True CI01000027_05675953_05678901
CI01000027_05668637_05672662.mRNA mRNA upstream 38413 5666375 ~ 5673064 (+) True CI01000027_05668637_05672662
CI01000027_05719979_05720814.mRNA mRNA downstream 5330 5719903 ~ 5721334 (+) False CI01000027_05719979_05720814
CI01000027_05724339_05733809.mRNA mRNA downstream 8861 5723434 ~ 5733859 (+) True CI01000027_05724339_05733809
CI01000027_05735304_05738483.mRNA mRNA downstream 20554 5735127 ~ 5738924 (+) True CI01000027_05735304_05738483
CI01000027_05740951_05748956.mRNA mRNA downstream 26378 5740951 ~ 5748956 (+) True CI01000027_05740951_05748956
CI01000027_05757143_05758496.mRNA mRNA downstream 42440 5757013 ~ 5758881 (+) False CI01000027_05757143_05758496
TU159891 other upstream 638341 5072377 ~ 5072419 (+) True G140681
TU159886 other upstream 640609 5069352 ~ 5070868 (+) True CI01000027_05069310_05070638
TU159892 other upstream 655538 5048923 ~ 5055939 (+) True G140682
TU159641 other upstream 925817 4780417 ~ 4785660 (+) False G140440
TU160140 other downstream 42409 5757776 ~ 5757799 (+) True G140921
TU160143 other downstream 248633 5963206 ~ 5965326 (+) True G140924
TU160291 other downstream 556794 6271367 ~ 6271600 (+) True G141052
TU160305 other downstream 991804 6707174 ~ 6710632 (+) True G141061
TU160326 other downstream 1183838 6898411 ~ 6900923 (+) True G141082

Expression Profile