RNA id: CI01000027_05757143_05758496.mRNA



Basic Information


Item Value
RNA id CI01000027_05757143_05758496.mRNA
length 842
RNA type mRNA
GC content 0.36
exon number 4
gene id CI01000027_05757143_05758496
representative False

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5756982 ~ 5758881 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCATATAATTCACTTTGATATTCAAGGTGTTTTAGCTCACAGCCAGAAAGGCTTCTTGTGCGTTTTTAAAGAAACCTTAAGTCAGGGCTGCACCAACCCTGAGTAATTCTCTCCTAAACCTGCGCTCATAATGAGGAGGATTCTATACCTAATGGTCCCCATGAATGGACTATTTGACTGCAGTTCATGTTACCAGTTGGAGACTGGAGCGTTTATTGGGATCATCACTTGTGACATCATCCTCACGCTCCTCATTGCTCTCTCAGTCTACTGTTTTGTTTCCCGCCAGAAAAGGAGAGAGAGTTTACATGTGCAGCCCAGATGCTGTGGGTCAGGCAAAGCAAAAACTCACCAGCCTTCAATGAGGTCAAAGACAATTGAAGTGGAATCACCTTATCAGGAACTTTATGGAGTCCAATCAGATATATACAGTGATCTTCAGCAGTATCGGAAATGAGGTGACCATGTGACATTTAATGTTAATTATGGGTTGTGTACACACCCAAAAATATTTGGAGATTGCATTCATTAAGTTTTCAAACTGTATCATACAAATGTGTATTTACCCTAAATAAGCTATAGTAATTGATTTATGCAAACCGTTTTTCCTTGAATCCTTTTGATTGGTTGTGGCGTACATACAAAACAATGAATATAAATAAATAAATATATTTTTTCATGGTTTATGGAAATTAAATTATCTTAAAGAGTTTGTATTCCACATTTTTTTTAATATAGCTGTCACAGTTGTTTTCATTTTTATGTCATGTTTTTATTTATTCATAATATATCTTTGTTATGAAACTATATCAGAATATAATTCCCTTGCTCTTCATGTAGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU160113 lncRNA upstream 3638 5750231 ~ 5753375 (+) True G140894
TU160077 lncRNA upstream 75554 5619656 ~ 5681459 (+) True G140858
TU160171 lncRNA upstream 146835 5609873 ~ 5610178 (+) True G140946
TU160139 lncRNA upstream 148898 5602529 ~ 5608115 (+) True G140920
TU160148 lncRNA upstream 189360 5566567 ~ 5567653 (+) True G140929
TU160175 lncRNA downstream 62929 5821810 ~ 5822331 (+) True G140950
TU160088 lncRNA downstream 147915 5906796 ~ 5911149 (+) True G140869
TU160112 lncRNA downstream 199408 5958289 ~ 5959908 (+) True G140893
TU160094 lncRNA downstream 254808 6013689 ~ 6017411 (+) True G140875
TU160108 lncRNA downstream 406879 6165760 ~ 6170544 (+) True G140889
CI01000027_05740951_05748956.mRNA mRNA upstream 8057 5740951 ~ 5748956 (+) True CI01000027_05740951_05748956
CI01000027_05735304_05738483.mRNA mRNA upstream 18089 5735127 ~ 5738924 (+) True CI01000027_05735304_05738483
CI01000027_05724339_05733809.mRNA mRNA upstream 23154 5723434 ~ 5733859 (+) True CI01000027_05724339_05733809
CI01000027_05719979_05720814.mRNA mRNA upstream 35679 5719903 ~ 5721334 (+) False CI01000027_05719979_05720814
CI01000027_05711573_05714490.mRNA mRNA upstream 42440 5711477 ~ 5714573 (+) False CI01000027_05711573_05714490
CI01000027_05781043_05784234.mRNA mRNA downstream 21725 5780606 ~ 5784415 (+) True CI01000027_05781043_05784234
CI01000027_05789308_05795504.mRNA mRNA downstream 30275 5789156 ~ 5796059 (+) True CI01000027_05789308_05795504
CI01000027_05805062_05805690.mRNA mRNA downstream 46181 5805062 ~ 5806023 (+) True CI01000027_05805062_05805690
CI01000027_05807381_05817636.mRNA mRNA downstream 48148 5807029 ~ 5817665 (+) True CI01000027_05807381_05817636
CI01000027_05820700_05833750.mRNA mRNA downstream 61586 5820467 ~ 5834241 (+) True CI01000027_05820700_05833750
TU160081 other upstream 36248 5712612 ~ 5712702 (+) True G140862
TU159891 other upstream 683877 5072377 ~ 5072419 (+) True G140681
TU159886 other upstream 686145 5069352 ~ 5070868 (+) True CI01000027_05069310_05070638
TU159892 other upstream 701074 5048923 ~ 5055939 (+) True G140682
TU159640 other upstream 972609 4782442 ~ 4784404 (+) True G140440
TU160143 other downstream 204325 5963206 ~ 5965326 (+) True G140924
TU160291 other downstream 512486 6271367 ~ 6271600 (+) True G141052
TU160305 other downstream 947496 6707174 ~ 6710632 (+) True G141061
TU160326 other downstream 1139530 6898411 ~ 6900923 (+) True G141082
TU160307 other downstream 1194065 6952946 ~ 6957767 (+) True CI01000027_06951132_06956691

Expression Profile