RNA id: CI01000027_06951132_06956691.mRNA



Basic Information


Item Value
RNA id CI01000027_06951132_06956691.mRNA
length 1028
RNA type mRNA
GC content 0.47
exon number 6
gene id CI01000027_06951132_06956691
representative False

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 6951132 ~ 6957767 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCCTGCCCAAATTCACAACCAGCCGCCTGTCCTTGAGCACTTCACCAGCTCAAAGGCCTTCCAGAAAGAATCTTCCTATGGAAACTTCTGCTTCACTTTTTCATTTAAGGAGCTTCTCTGGCACTATGGTGAGCAGTTCGGTGGTGGCCAAAGTCCAGTCCTGCGTGTTTATGAGACTATGCTCTACAAAAAAGAGATTCAATATACGGTTGTAGTGCATCCTCGTTACGTAAATATTTATGACCATTATCCTCGACTTCCAAATCATGGTGATGGTGTTTGTGGATACAGTGGTGGGGCCATGTGGTGGCGCTGTCAATCCCCCGCTGAAGCTTACAAGAATGAGCTTGAGCTGGCAGGGACTGTGACAGTGAGGGAACTCTACAAGCAGGAGCTTCGATTAGAGGAGTCTTCTTACCATGGGGAAGTCAGGCTTTTTTGTGAGGAGGTGCTGAAGACTCATAATGAGTACAGGAGGAAACATCAAGCTCCACCTTTAAAACTCAGCAGTAAACTGAGCCGTGAAGCGGCAAGATATGCTGAGAGCCTTGCTAGCACCAGGATTCTGAAGCACAGTGCTGAGTCTAGTAGAGGAAACTGTGGAGAAAATTTAGCGTGGGCATCTTATGATCAAACAGGTAAAGATGTGTCTGATCGCTGGTATAATGAAGTGAACCAGTACAACTTTAACCAGCCAGGATTCTCCTCTGCAACTGGTCACTTCACTGCAGTGGTGTGGAAAAGCTCAAAGAAACTCGGTGTGGGTAAAGCTGTGGCCTCAGATGGTTCTACCTTCGTAGTGGCACGTTATTTCCCTGCCGGCAACATTACCAATCAGGGCCACTTCCAGGCCAATGTCCTGCCCCCTAAAAGCTGATCCAAATGTAGCTGGACACAATGAGATCAAAGGGAAGGGAACAGAAAGAGGACAGGGAACAGCTGAAATTGGAGAGACTTTTACCTGGAGGACCAAACAGCGACTGTGCAGCGCAGGATTTGGTTGCCTTAGATATACAGGTCTTACTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU160333 lncRNA upstream 35948 6912496 ~ 6915184 (+) True G141089
TU160465 lncRNA upstream 71783 6879005 ~ 6879349 (+) True G141211
TU160463 lncRNA upstream 79914 6870981 ~ 6871218 (+) True G141209
TU160448 lncRNA upstream 170650 6779685 ~ 6780482 (+) True G141198
TU160447 lncRNA upstream 172636 6778215 ~ 6778496 (+) True G141197
TU160474 lncRNA downstream 15274 6972116 ~ 6972331 (+) True G141220
TU160475 lncRNA downstream 16418 6973260 ~ 6973484 (+) True G141221
TU160340 lncRNA downstream 21881 6978723 ~ 6980471 (+) True G141096
TU160354 lncRNA downstream 230687 7187529 ~ 7191167 (+) True G141110
TU160508 lncRNA downstream 236583 7193425 ~ 7193627 (+) True G141254
CI01000027_06947553_06950983.mRNA mRNA upstream 149 6946261 ~ 6950983 (+) True CI01000027_06947553_06950983
CI01000027_06915303_06927001.mRNA mRNA upstream 23824 6915303 ~ 6927308 (+) True CI01000027_06915303_06927001
CI01000027_06906104_06909909.mRNA mRNA upstream 40968 6906104 ~ 6910164 (+) True CI01000027_06906104_06909909
CI01000027_06859191_06877582.mRNA mRNA upstream 73507 6859191 ~ 6877625 (+) True CI01000027_06859191_06877582
CI01000027_06811768_06817052.mRNA mRNA upstream 133969 6811094 ~ 6817163 (+) True CI01000027_06811768_06817052
CI01000027_07055665_07057014.mRNA mRNA downstream 98275 7055117 ~ 7057254 (+) True CI01000027_07055665_07057014
CI01000027_07142789_07157141.mRNA mRNA downstream 185473 7142315 ~ 7157987 (+) True CI01000027_07142789_07157141
CI01000027_07216718_07225808.mRNA mRNA downstream 258926 7215768 ~ 7226571 (+) True CI01000027_07216718_07225808
CI01000027_07292677_07331000.mRNA mRNA downstream 335835 7292677 ~ 7331032 (+) True CI01000027_07292677_07331000
CI01000027_07375781_07378401.mRNA mRNA downstream 418939 7375781 ~ 7378421 (+) True CI01000027_07375781_07378401
TU160326 other upstream 50209 6898411 ~ 6900923 (+) True G141082
TU160305 other upstream 240500 6707174 ~ 6710632 (+) True G141061
TU160291 other upstream 679532 6271367 ~ 6271600 (+) True G141052
TU160143 other upstream 985806 5963206 ~ 5965326 (+) True G140924
TU160140 other upstream 1192262 5757776 ~ 5757799 (+) True G140921
TU160585 other downstream 511902 7468744 ~ 7468892 (+) True G141315
TU161924 other downstream 993861 7950703 ~ 7951942 (+) True CI01000027_07947743_07951397
TU161938 other downstream 1069555 8026397 ~ 8032041 (+) True CI01000027_08026500_08029412
TU161951 other downstream 1301495 8258337 ~ 8258629 (+) True G142511
TU162507 other downstream 2771973 9728815 ~ 9729551 (+) True G143033

Expression Profile