RNA id: CI01000027_07618538_07623119.mRNA



Basic Information


Item Value
RNA id CI01000027_07618538_07623119.mRNA
length 3556
RNA type mRNA
GC content 0.40
exon number 4
gene id CI01000027_07618538_07623119
representative True

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 7617285 ~ 7624255 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTATAAAAAAAGATACTTTAACTCAAGTATGATATACTCAAAATGTTTTATTTAATATGGTGAATGAAGTGTATTTTTAGCTGTGATTCAGGATGCATTCAGGTATTTCTGTCATATTTAGGGTTTGTTTTTTACCTCTTTGTATTGCCTTTTATTGCTTTGTAAAAACATTATTACATTATCTATTATGTTAATATCTACATATGCTAATACATTTAAAAAAAAAAAAAATTTTTTAACATGAATATGTTTTGAACAAACAATTAACAACAATATACACTGCCTGACCAAAAAAGCAATGTTATATGTTTGGCAACAGTTCTTCTAACCCTAATTAAAGGAGTGTGTAGCTTTTCATTTCTTAAACAACCATGTATTAAGATGTATCATGGCCATATTCCCGGATGACAATGTCAAGATTCATCAGGCTAAAATTGTGAAAGAATTGTTGGGAGGATGAAGAATCATTTTCACACATGAATTGGCACCTCTGAGTCCAGACCTTAATTTTATGAAAGTCTTTGCGATGTGCTGGAGTAGACTTTACAGAGTGCTCACCTCTTGCATTGTTGACTCTTTCACATTTTGAGCCTGATGAATCTTTTTGGCCAGGCAGTGTATTTAACCCATATTAATAAATGATGTTAAAATTGATGTTGACAATTGAATCTAATGGAACCTTATTGAAAAGTGTTACTAGCAATCTTTCAGCATTCCCATTCATCTCAATGATAGTTGCTTGGTTGGCGCAAGACCCCCCTGAAGTACATTATTAGAAATCTGTCATCTTTGCTCATGGTGGCTCAGTTCTGCAATTAATCACCTGAGCTGTAAAGAAAGTAACAAAATGGCATATGTTGGCTCAAATTCATCTCTTAGTAGGTAGAAGCTAGCCAAATTAGCCAAACAGCAGCACAGATAGGTTGCAAGATATGCCCTCATCCATGAAAACTAAGGTGAAAGACTAGGTACATTAAGCTGATCTTTTTTTTATTTTTTGAAGTGTGTCAAAGTACAAAAATCATCATTGGAAACTAACTAAGGTGAATGAATAAAGTTTTCTTCTCTGAGGTGAAAACAAGATTACAGCAGCCTTTCTGGCCCAAATATAGATGGTATGGGTCAGTGAAACTGTAAATTCTCCAAAAAGTAGTATTTTTATATACATATTATATACATATTTTAAACTCATATGATAAACCTGTGTGTGTGTGTAGTGTTCCTGATCAGTTGGAAGCGTGAGCTGCAGTGATATGAGTCTCTGGTTTGGTGAAGGCAGATCGTTTCTGCTGCTTTTGCTGCTGCTGTGCTGTGGGACACTGCTGACCTGGACCAAGACCAGCCGACACCAAGGGTCCCGCACACCCGCAAGCATCCACACTGATGACATCATACTGGCTGTCATACTCCCTCAACACAATACATCCTACCCCTGGGCATGGCCCCGCGTGGGACCTGCTCTGGACCGCGCCATTGCTCGAGTCAATGCCGACCCCACTCTGCTGCCCCGGCACCACCTCCGCCACATCTTTGCAAACAGCGAGGATGGGGATGGTATCTGCTCTGAGTCCATCGCCCCCCTCATGGCCGTGGACCTGAAGTTCGAACACAACCCGTGGGCCTTCATAGGACCTGGCTGCGACTATACCTCCTCCCCAGTTGGGCTGTTCACTGCTCACTGGGGCCTTCCAATGATCACGGCAGGGGCCCCTGCTGTAGCTTTCCTGCACATGGAAATGTACACCTCCATCACCAACACGGGCCCCACACACAAGAAACTGGGTGAGTACGCCCTCCACCTCTACAGACATTTCGGATGGCACCAACACACCCTGCTGATGTTCAGTGACACCAAAATGGGCGAAAGGGCGTGCTACTTTGCCCTGGAGGGGCTTTACACAGAGATGCATGAGGAAAACATCACAACCATGGACCTGGTATTTGAGGAGAACAAAGGACCTGTTAATTATTCCGAACTCCTACACAAGATCAAGGATGATGGAAGAGGACAGACAAAAGCCTGGGCGATCGCAAAGAGTCAGTATCAGAATAAGTATTATATTTCAGTGGGTTATAAGTACAAACACTTAATAGAACCATCCACTGATCTCGGAAGAGCAGAAATGCTCTTCCTCACCTCCTGCCTCTTTCCTCTCAACCCTGTAAAAACATCCTCACATCATCAGCAGCAGGAAGACAACACATGGAGGCACACCGCCTCCTCTGTAGCATCAGTCTACCTTGTCGTCATCTTTTCGACTAAAATGCCAATCTTTGTGACTAGACCTTCGTGCCCTCTTGTCGTCATGGTTGCCGAGCGCAAGAGCGGCCATGCTGAACTAAACTACCCAGAAGGCCGTGGTTCGCTTCTCTCTGCATTTCTATCCATCTGGATCAGCTTAAAAATTAATCTGAACTGAGGTGTAGAGAAGGATGGAAAAGAAAAAAGAAAAAACTACAAAAATTTGTAGACTTATAGCACACACTTTTATAATCCTAGAACAGCTTCTCTGCTTGATGGAGGAATGCTGTATTTAGATATTTCAGGTCGATATTTCCCATCATTTCTGACCTTTGGATATAAAGAAGAGTAACTCAATACCTCCAGTACTAAACCCAAACATATCAAAAGATTCATTCATTGAGGTGAAAGCTTGTCTTTAGTTCGATCTTGAATCTGCCCCCCATGAACAGAATACTCAAGTCATAATGTTCTCTTCGTGACAGCAGAACATAAGGTTCAGTTTAATACAAGAATGACCTCACATCCTCTAGAATGAGCTAATGTTAGGCAGACATCCCTTACATCACACAGATTCCTGCGCTAATATAATTTGTAACCCTATACTGGCTTATGTTAAACAGCATTAGTAGAGAAACATGACAGACTTGACTTGACACGACAGACATAAATTAGATTATTTTTACCGTTTTCTTAGTGCCAGAACCTGAACCTTTTTGTTGCTTACAGTCAAACATTAGGTTTTCCGTTAAACAGTTATCTCTAACTGTGCTCAGTTTTTTTTCCCCCAAGGTTGATTTTGTGTTTAGATTTATGAACTTCATTGTGTTGGTCTATTGTTGATACGCATGATTGGAAATCTCCATTTTTGGGTAAAATCACCATTTTAAAGATTAGCTGTTTTATTTTTTTATGTTGATGGATTTCTTTTTTTAAACAGGAAGTTTCTGTAGGAAATATTAGGGTATCAGCTTTAGTTAAGTCTCATTCATGAATCATGATTTGCTACTTGTTGGTTGCAGGTGGTATTTGGGCGTGGGACTCTCTTGTTCTAGAGAGGATTTGATTGGACAAAAATCTGTGTAGTGCAAGATGAGTCATTTGTATTTTTTGTCTATTTTCCTAGAAGAGAAAGACTGCGTAAATTTGTGTTTAAATTCTAAAAGTGAATTTTGTCAATGTTTCGAATTACACTAGACATCAAACATGGACTAAAATCCACGAAACTCTTTAAAAAATGTTAAAATAATGATGTCTTTAAGTTATAAAAAAGAGTCTGGGTCATAAGATGTACTGGTGTGCCATTTCATATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU160654 lncRNA upstream 80952 7536117 ~ 7536333 (+) True G141380
TU160652 lncRNA upstream 87283 7529799 ~ 7530002 (+) True G141378
TU160603 lncRNA upstream 102406 7502066 ~ 7514879 (+) True G141330
TU160637 lncRNA upstream 115798 7501157 ~ 7501487 (+) True G141364
TU160628 lncRNA upstream 283148 7333909 ~ 7334137 (+) True G141355
TU161766 lncRNA downstream 92865 7717120 ~ 7722230 (+) True G142360
TU161758 lncRNA downstream 160519 7784774 ~ 7800723 (+) False CI01000027_07789066_07797594
TU161759 lncRNA downstream 160519 7784774 ~ 7798890 (+) True CI01000027_07789066_07797594
TU161855 lncRNA downstream 180287 7804542 ~ 7804806 (+) True G142446
TU161861 lncRNA downstream 189405 7813660 ~ 7820886 (+) False G142452
CI01000027_07605090_07608785.mRNA mRNA upstream 7745 7604860 ~ 7609540 (+) True CI01000027_07605090_07608785
CI01000027_07561011_07562818.mRNA mRNA upstream 53440 7560891 ~ 7563845 (+) True CI01000027_07561011_07562818
CI01000027_07545610_07559939.mRNA mRNA upstream 57127 7545610 ~ 7560158 (+) True CI01000027_07545610_07559939
CI01000027_07541256_07541975.mRNA mRNA upstream 75133 7541256 ~ 7542152 (+) True CI01000027_07541256_07541975
CI01000027_07529488_07537870.mRNA mRNA upstream 78174 7529488 ~ 7539111 (+) True CI01000027_07529488_07537870
CI01000027_07634015_07663101.mRNA mRNA downstream 9709 7633964 ~ 7663410 (+) True CI01000027_07634015_07663101
CI01000027_07666350_07684399.mRNA mRNA downstream 42095 7666350 ~ 7684460 (+) True CI01000027_07666350_07684399
CI01000027_07686575_07690215.mRNA mRNA downstream 62320 7686575 ~ 7690347 (+) True CI01000027_07686575_07690215
CI01000027_07695223_07701346.mRNA mRNA downstream 70791 7695046 ~ 7701823 (+) True CI01000027_07695223_07701346
CI01000027_07789066_07797594.mRNA mRNA downstream 164381 7788636 ~ 7797600 (+) False CI01000027_07789066_07797594
TU160585 other upstream 145571 7468744 ~ 7468892 (+) True G141315
TU160307 other upstream 659518 6952946 ~ 6957767 (+) True CI01000027_06951132_06956691
TU160326 other upstream 716362 6898411 ~ 6900923 (+) True G141082
TU160305 other upstream 906653 6707174 ~ 6710632 (+) True G141061
TU160291 other upstream 1345685 6271367 ~ 6271600 (+) True G141052
TU161924 other downstream 326448 7950703 ~ 7951942 (+) True CI01000027_07947743_07951397
TU161938 other downstream 402142 8026397 ~ 8032041 (+) True CI01000027_08026500_08029412
TU161951 other downstream 634082 8258337 ~ 8258629 (+) True G142511
TU162507 other downstream 2104560 9728815 ~ 9729551 (+) True G143033

Expression Profile