RNA id: CI01000027_08285855_08291534.mRNA



Basic Information


Item Value
RNA id CI01000027_08285855_08291534.mRNA
length 1939
RNA type mRNA
GC content 0.41
exon number 4
gene id CI01000027_08285855_08291534
representative True

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 8285769 ~ 8292823 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGGACGTAGGAGAATGCTGCGTGCTACTTGACTGAAAAGTATGAATGATCTGACTGCAAACTTTACCGCTTTTGTGGGAAATCAGGTTAATCTTCAATGGATTTGCAAGAATACAAAAGAACAACCTGTTTCATTCTCTTTCACTCTCTAAACATCTGAACTAAAGGCTTTAGATTCAAAATCCTCTCCTTTGCTCAGGGTCTTCAGGCTTTTATGCTTCTCTGCTATCAGCAAATGCAGAAAAATACAGTGAAGAGTGGCATCAAAAACATTTCTGAACATTTAAAAATCACACCATTGTAAGAATTTCTTTACACTTGAAATCTCACAACACAACATTATCCTTCAAGTTTACAGACAGGTAAAAGACAAAAAATCCTTCATATTAGCACTGTATTGGGTCAAATTTTTACACTTTTGACACATTATAATGTACAGTAAGATGTTGTTGACTTAAAAATTTGCTAAATTTGACAAATTAACTTTTAGTGACCGTTACATGACGGCAAAGATAATCTAAATGTAAAAACAAGGAAATTAGCTTCTTAAGATATAATTTATCGGTAACTTCGATATACTGTACACATTTCTGGTTCAGTGCTATTAAAGAGGTACTTGGGTCTTAGTGATGGGGCTGCAAGGATACATAAAACTGAAAAAAGTTTTGAAAACACTGAACTAAATACAATGACATTCATACATTAAGTGTGGCTTAAGTGTCCAATTTTTGGGCCACTGTTCTAGGACAAAAAGATCCTGCTGTACTGGGTCTAGAATAGATGTGGGTTAAATTAGCTGCTTTGCTCTGCAGAATGTGGTGCTTATTGACCAGAGAGCTCTGAGGGATTTCACCGTCCTACTGCTGGATTTTAGATTAGCTCAGGTATTTTTCACCCTCTTTGACGACAGCTGAGTAGATTTACAGTGAAAATCTTTTACTGAAAACAGCTGCTCATAGAAAAAAATGGTTCTAGTTCATAAAGGATATTCCAGGATTAGCTATCTCTCCATCCGCACACAGGACTCAGCAAAATGACCTTTCACCCAGAAAACAAATACTTCGCGCACAAGGACCCAACCGCTTCTCAAATTCTTTTTCTAAATCAAATCAACTTTAAATTGAACACTTGGCAGCAAAGAAACAGTCGAAATATGGGTCAGAGAGCTGTAGGAACGCGAATCATTGGATAGAAAAAGCAGAATGTGGTCAGCTTCTCACGGTTTTACGTTTTCTTCGATTGCAAAACATGTGGTGGGTGTCATCCAATAAACTCTGAAATGAGAAAGCAATGAGCAAATGCCACCAAAAATCCACTAAAATGGATCAATACAGAGAGAAAGAGAGAGAAGGAGAGGTTCAGCTCCTTTCGTGCAACACTAATGCATTTCAATTTTCCCTCAAAAGAAAAGATCGTTTCGGATCGTCGTCTTGGTCTTTACGGGCCGTAATCTCTTCATTAGGATTGCATGTGTACGTTTCATTAATGTCGAAAAGCTGTGAGCGAGTTTCCGCTGAACAGTTGTTTACGTTCCGTACAGGCCGGTGTGCTGGGACCAAGAGTGCGGAGGTGAGCAAGAGGTGTTTAACCTTGCTGTTATTTACTGGCCCGCATAGACTGGCTTGGAGGAGGGAAGGGACAGATTGTATCCAGAGGGGCTTAACTGTGGATGCACATCACGCTGGGGGAGAACAGGTGGAGGAAGAGAGGAATGGATGGATGGATGCATCTAATGAATACTCCTACTCACACAGTGATGTTTCCTGCAAGGGGCCCCCTGAGGAGCTCTGTCGGGCTGGGCTGATGAGGAAGGACTCATCAGAAGGACTGACGTGGAATCGGGACGATCAATGAGTCCGGTCTGAAAGCAGTCGCTAAGAAAAGCAACCGGTGCAAATGTGCTTGTCTGAGAAGAGGAATTTGTGGCACAAACAATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU163035 lncRNA downstream 52381 8233185 ~ 8233388 (-) True G143504
TU163033 lncRNA downstream 57397 8228151 ~ 8228372 (-) True G143502
TU162952 lncRNA downstream 114957 8170586 ~ 8170812 (-) True G143422
TU162930 lncRNA downstream 168223 8115839 ~ 8117546 (-) True G143403
TU162922 lncRNA downstream 192176 8093317 ~ 8093593 (-) True G143395
TU163088 lncRNA upstream 65999 8358822 ~ 8359102 (-) True G143557
TU163000 lncRNA upstream 70849 8363672 ~ 8371459 (-) True G143469
TU162990 lncRNA upstream 93138 8385961 ~ 8388109 (-) True G143459
TU163091 lncRNA upstream 98635 8391458 ~ 8391661 (-) True G143560
TU163105 lncRNA upstream 148686 8441509 ~ 8442365 (-) True G143570
CI01000027_08134523_08134951.mRNA mRNA downstream 150460 8134487 ~ 8135309 (-) True CI01000027_08134523_08134951
CI01000027_08091338_08097220.mRNA mRNA downstream 188549 8091293 ~ 8097220 (-) True CI01000027_08091338_08097220
CI01000027_08081583_08083496.mRNA mRNA downstream 202273 8081269 ~ 8083496 (-) True CI01000027_08081583_08083496
CI01000027_08073979_08077754.mRNA mRNA downstream 208015 8073661 ~ 8077754 (-) True CI01000027_08073979_08077754
CI01000027_08016916_08025375.mRNA mRNA downstream 260314 8016529 ~ 8025455 (-) True CI01000027_08016916_08025375
CI01000027_08422679_08426771.mRNA mRNA upstream 129856 8422679 ~ 8426771 (-) True CI01000027_08422679_08426771
CI01000027_08429132_08434558.mRNA mRNA upstream 135489 8428312 ~ 8436258 (-) True CI01000027_08429132_08434558
CI01000027_08443968_08446252.mRNA mRNA upstream 150354 8443177 ~ 8446436 (-) True CI01000027_08443968_08446252
CI01000027_08483034_08503082.mRNA mRNA upstream 190116 8482939 ~ 8503082 (-) True CI01000027_08483034_08503082
CI01000027_08514843_08515829.mRNA mRNA upstream 221665 8514488 ~ 8518341 (-) True CI01000027_08514843_08515829
TU162851 other downstream 399720 7884535 ~ 7886049 (-) True G143325
TU162783 other downstream 612000 7669329 ~ 7673769 (-) True G143267
TU161694 other downstream 845578 7439178 ~ 7440191 (-) True G142299
TU161593 other downstream 1127771 7153637 ~ 7157998 (-) True G142209
TU161596 other downstream 1127956 7153623 ~ 7157813 (-) False G142209
TU163997 other upstream 2245957 10538780 ~ 10542148 (-) True G144365

Expression Profile