RNA id: CI01000027_09860217_09913586.mRNA


Basic Information

Item Value
RNA id CI01000027_09860217_09913586.mRNA
length 1638
RNA type mRNA
GC content 0.52
exon number 13
gene id CI01000027_09860217_09913586
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 9860217 ~ 9913586 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGGGGATGGCCTTCTCCCTGGAAGAGCGCTTGGAGCTGGGCATTCATGGCCTGTTGCCTCCCTGCTTCCTCAGCCAGGATGTGCAAGTATTGCGGGTCCTCAGGAACTACGAGCTGAAAAAGGATGACTTGGACAGATACATATTTCTGATGGGCCTTCAGGACCGCAACGAGAAGCTGTTTTACCGGGTCTTGATCTCAGACGTAGAGAGATTCATGCCCATTGTGTACACGCCTACTGTCGGTCTAGCGTGCCAGCAATACGGCCTTACCTTCAGGAGACCTAGGGGCCTATTTATTACAATTCATGACCGCTCCCACATCCCCACACTACTTCAGAGCTGGCCAGAGAAGGACATTCGTGCTGTAGTAGTGACAGATGGAGAGAGGATACTGGGCCTGGGGGATCTGGGCTGCTATGGCATGGGCATCCCAGTGGGTAAACTGGCCCTCTACACTGCCTGTGGTGGAATGCCTCCTCAGCAGTGCCTGCCTGTAATGCTGGACGTGGGGACAGACAATGAGGAACTCCTTAAGGACCCTCTGTACATTGGTCTGAGGCATAAAAGAATACGTGGACAGGCCTATGATGAGCTGCTGGATGAGTTTATGAAGGCCATCACAGACAGATATGGGGTGAACTGCCTTATCCAGTTTGAGGATTTTGCCAACACCAACGCCTTCCGTCTATTGAGTAAATACCGCAACAAGTACCTCACGTTCAATGACGACATCCAAGGTACTGCTGCTGTGGCTGTGGCGGGACTGCTGGCTGCCCTTCGCATTACCAAGAGCAAAATGTGCAACCATACCATTGTGTTTCAAGGTGCTGGGGAGGCCGCAATGGGCATAGCTGAGCTGATCATTATGGCGATGGAGAAGGAGGGGCTTCCTCATGAGCAGTGTATAAAGAAAATCTGGATGGTGGACTCTAAAGGACTTATCGTTAAGGGAAGGGATCACCTCACCCACGAGAAAGAGAGGTTTGCACATGAGCATGCACAAATGAAGAAGCTTGAGGATGTTGTGAAGGAGCTGAAACCCACTGCTTTAATTGGGGTGGCAGCTATCGCTGGTGCTTTCACTGAGAAGATAATCAAGGCTATGGCATCCTTCAATAAGAGACCTATCATCTTCGCTCTAAGCAACCCTACCAGCAAGGCGGAGTGCACTGCTGAGCAGTGCTACACACTCACTGAGGGAAGGGGAATATTTGCAAGCGGGAGTCCCTTTGATCCGGTAACCCTTCCCGATGGCCGGAAGTTTTACCCCGGTCAGGGCAACAACTCTTATGTGTTCCCTGGAGTGGGGCTGGGGGTCACCGCTTGTGCGATGAGACACATCCCTGAGGATATTTTCCTCGTTACGGCTGAGACCATAGCAGAACTGGTGACTGAGAAGGATCTTGCAGAGGGGCGTCTGTATCCTCCTCTCAAAAGCATCCAGGATGTTTCCATCAAGCTGGCTGTGAAGATTGCGGAGTACGCCTATAAACACAATATGGCAACACTGCACCCGGAGCCGCAAGATAAAGAGGCTTTTGTTCGTTCGCTCATCTACAGCACAGACTACGACGAGTTCACGGTGGACTCATACAGTTGGCCTGAGAATGCCATGAACGTCCAAACGTGCAAACTG

Function

GO:

id name namespace
GO:0051287 NAD binding molecular_function

KEGG:

id description
K00029 E1.1.1.40, maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163489 lncRNA downstream 36721 9746900 ~ 9823496 (-) True G143883
TU163471 lncRNA downstream 214642 9645339 ~ 9645575 (-) True G143868
TU163469 lncRNA downstream 216299 9643687 ~ 9643918 (-) True G143866
TU163468 lncRNA downstream 219063 9640889 ~ 9641154 (-) True G143865
TU163466 lncRNA downstream 220535 9639475 ~ 9639682 (-) True G143863
TU163549 lncRNA upstream 32664 9946250 ~ 9950618 (-) True G143942
TU163580 lncRNA upstream 157654 10071240 ~ 10071573 (-) True G143973
TU163592 lncRNA upstream 168268 10081854 ~ 10082473 (-) True G143981
TU163600 lncRNA upstream 182176 10095762 ~ 10095984 (-) True G143989
TU163806 lncRNA upstream 441216 10354802 ~ 10355030 (-) True G144183
CI01000027_09844761_09853770.mRNA mRNA downstream 6020 9844093 ~ 9854197 (-) True CI01000027_09844761_09853770
CI01000027_09735579_09766657.mRNA mRNA downstream 93560 9735489 ~ 9766657 (-) True CI01000027_09735579_09766657
CI01000027_09722965_09729563.mRNA mRNA downstream 129735 9722704 ~ 9730482 (-) True CI01000027_09722965_09729563
CI01000027_09714931_09721135.mRNA mRNA downstream 139082 9714876 ~ 9721135 (-) True CI01000027_09714931_09721135
CI01000027_09702760_09713076.mRNA mRNA downstream 146855 9702221 ~ 9713362 (-) True CI01000027_09702760_09713076
CI01000027_09964935_10012668.mRNA mRNA upstream 51012 9964598 ~ 10012668 (-) True CI01000027_09964935_10012668
CI01000027_10015409_10036875.mRNA mRNA upstream 101555 10015141 ~ 10036875 (-) True CI01000027_10015409_10036875
CI01000027_10042471_10043723.mRNA mRNA upstream 128790 10042376 ~ 10044700 (-) True CI01000027_10042471_10043723
CI01000027_10204234_10204662.mRNA mRNA upstream 290519 10204105 ~ 10204733 (-) True CI01000027_10204234_10204662
CI01000027_10401933_10404459.mRNA mRNA upstream 488117 10401703 ~ 10405712 (-) True CI01000027_10401933_10404459
TU162851 other downstream 1974168 7884535 ~ 7886049 (-) True G143325
TU162783 other downstream 2186448 7669329 ~ 7673769 (-) True G143267
TU161694 other downstream 2420026 7439178 ~ 7440191 (-) True G142299
TU161593 other downstream 2702219 7153637 ~ 7157998 (-) True G142209
TU161596 other downstream 2702404 7153623 ~ 7157813 (-) False G142209
TU163997 other upstream 625194 10538780 ~ 10542148 (-) True G144365

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00021228 False 1910 mRNA 0.48 14 NC_007127.7 32843315 ~ 33001153 (-)