RNA id: TU156795


Basic Information

Item Value
RNA id TU156795
length 5029
RNA type TUCP
GC content 0.40
exon number 5
gene id G138030
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 39146 ~ 100257 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTATACAATTGAAATTTGTAAACCTTCAAAAATCTTTAATTTTTTTTTTTTGAGTGTACTAAGTCATAATTATGGATTTTACTATACAGTTTAAATTAGTAAATCTTAAAAAAAAAAGGCTTAAAAAGTGTATTAAGTCATAATTATAAGAAGAAAACTGACATAAAGCATGATTATTTTCTTATGTGCGATAATCCACAACTGTTGAGCTCCACAAAAGCATCAAAGAAGCAGTACATAAATATATTATTTTGCCCAGTATGTGCGTACAGTATATTTTATGCTGATTAGAATATTGCATCGTTATTTAACCACAAGATAAATGAATAAATTATCCATTGAATGTCTTATGCAACAAATGGTGATTAAATGATGACAGAATCATGATTTAGGGTGAATTATTGCTTTTAAAAGAGGCAGATGGTATAACAAGCTTGAGTTTCTGTCAAGTTGGGCTTCGGTTCACTTTTACATCGAGACAAGCTGCTATAGCAAATGTTTTCAACATTGCTCTAAGAGGCAATGAAGCATCACAAGTGATTTTGTTTAAGAAAGAAGACACCAGAAGGATGAGATATGCTCACCAACAGATAATTTCCCTGTTTTAATTAGCAGACGACTAAGTGGCCGTTCAAACAGGACCTTCTTCTTGTGTTAAAAACAGCGGAGCGCAACAGAAGGTGTGTTTATAGGCACATTAACTCACTGACACCTGCTAATGTTCACCTCAAGATGTTCATTCTGACTCCTGATCCAGATCCCATTCATGTTTTAAAACTGACACTGATTTGTTGAACTAATTCATCAAGATGAAATCAAAGTAGAGAGGGCGGTTCGAACAGGAGGGGTTACATTGGTGCCGTGACCCGGATGGGAGTGAGGTTTAGGGGGGTGTAACGGAGGTCAGTAAGAGCTGTGCGTGTAAACCTCACTTCCCTGGCCTCAAGAGACGCACTAGCAACTGATGCTAGAGACTGCGGTCTTTAGCGTCCTTGTTAGCGAGCCCGCCTCCCATGCCAGAGACCCTGGTTCGAATCCCGCTCAGAGTGGGTCAAATAGGACCAGTGACACATTTACTGAAAATAGCAAGAGAGAGATGTGGCACATGTGTGCATAGACCAAAATTAAAATAATAAATGGTTAAAACTGAAGTTTTTATAATATTTCACTGCACAGAGTTTCCATTATGAAAATTGCATTTTCAGAGGGAGGCGAAATGAGTGAAACTTCATGGTGTTACAGACCGCCATCAATTTTCAATTTGCATAAGAAAATAAATGGATACGTGGATAATCCATAACAGACGGTTGTGATGGGATAGAGGGGTTATTTCATGACAATGATATTATTACCATGATCATCTGGGATGTTTCGGATTTAAAGTGAACAACAGAAAATGAGGACGGTTCGAAGGGATAATAATGGGGTTATGGGTTCACACGGTTCTTCGGCTTTTATTAATGAGGTGAACGTCTTGTATTTCAGACATCACATCCCATAATCCAACTCAATCACAAGACTATGGTTTCAGATAGAAAGCATTATCCTGTCTGACTCACGGTTTAGGTTTTGCATAGACAGTGTTATTAAAAAAAGAACAAAAAGTATGTGTTAAAGAAAAAATACTCATTGTCATATTATCTCTGAATCCGCCACTTTTTCCATCAGCTTTCTGTTAGTCAACGCAAAATCTGCGCAGCGAAAATCTTGATTGCATGGATTCTATTGAAATTACTGAAATTACTAAAACAGTAAAACCTAGTTCACACCAAGAACGATAACTATAACGATAACTATATTTTTGTCCACACAGACGAACGATAATGGTCTGTTTATTCTGCAGTTTCAAAGTGTGTACAACATGTTTTTGCTGTTATTGTTGCATTTACATGCTTTAACCAGCTGATGTTCTCAGCATGCTATGTTTGGAGTGAATAGCTAGTGTAATCGATCTAATCTAACAGCTAATTTAGCTGACGAAGTCAATATAGTGGAATAAAAACAACGGCTAGTCTTTTTCACTGCAGCTTCAAAGGAAGCAAGACAATGTTGTCCAAACTAGCGTTGGATACCTGAGCTAATTTTATTTTACACTGTTTGCTAGCCTGCCATAATGATCTCAGCGTTAATACTTCTCACCATTTATTCTGAAGGTATGACTGATTGCTTTCCATATATCCATTTTCTTTAAAGTATCCTTGAAAATGGGGTTTGACTTGTCAAACAGTGGTGGATTTTTCAGGACTTCTGCGATTAACTTGATGTCCGCCATTTTAAATGCGCAAGCCCTTAAATTAGAACGGATTCCAATTGGCTGTCAGTGTTTTATCATTCAACAGCTGGAAAAAATCATTCTGAAAGTGATCCCAACGATATTGTTTATCTATATCATTATTGTTATAGTCGTGGTGTGGACAGTGCTATTCTTTTATATTTAAAACGATTTTTAGAACTATATTTTTATCGTTATCTTTATAGTTATTGTTCTTGTTGTGAAGGGCCTTTAGTCTCACTTAAAATGTCATTGCATTAGTTAAAATATAAAACATTTACTTGAGAAGAAAGAGAGCGCAAGCACACTTTACAAGAAAAAACATTGCACAAATAGTTCAAAACCACTTTCTGGTTGTCAAATGTTAGCAAGATGAATCAAAGAATGTGCATTAAGGTTGGCATTTAGGGTTGCCAGGTTTGCGTAACAAAACTATTGCTATTCAAAACCCAGCCAATTTACAGCCAAAACTAGCCCAAAATCGCATTCTGGGGGGTTCCCCAGTAAAAAAAAATTAGTTCCCGCGATGGGGGAGGGGTCACTTCAACCTGCGGCAACAGTGTAAAAGTAGCCCAATGCCGCAGGAAAACCGCGGACTTGGCAACTCTGTTGGCATTAAAGGCTATTGTGACGTATATGCGAGTGAAATGCTTCTCGAACAAGAACAAATGTAGGGCGGGGCTTGATTTTGTCTGTGGGGAATTGATTGGATGGTTGTGGTTTGCTATTGGTGGATCTCATGTGAGTGACAGGTTGCCCCACCCTCATCATTAGAGAAGAGAAATCACTGCAAGAGTTATTTTGACTCAAGATTACGAGGCACATGAAATTAAAACAATACTTTTAAAACAGATAAATCATTTATAATAAATACTAAAATATTCCATTTAAAAATAAGAATCAATTTTGATATTACAGTGACTTTAATAAAGTGAATCTCATTTTGATTTCATGTTAACTTTTGTGCATCACCTGAGCTGTGTGTGTATTTTCCATCAAGTCAGCATTGTTGCGTCGGCGTCTGGTTGTATTTATAATCTGGGTTTGCAGTGTCAGGGTTTTTCCAGCATGTGGTCTTCAGGGAGGGCGTGTGTGCGGGTCTGCATTAGCTCTAATGGCCAGAGGGGTCACGTTTAAAATCATAATGGCTTTTCCGCTCCCTCCTGCTGGGAGACACGTCTCCAACGCAGCCTCATCAGAAAGGACGTCCGCCCAATAAAAGATGCCGGCTTCAATCTCTCCGCATACGCTTTTAAAGAAATTCATTTTGCACTTCCTTCGTTTCCTTGCTTCTTAGACGATGGCGGTCGCTTCTTTTCAGAGCGCTTTCTGACATGTTGTCATTATAATTGTGCTTTGTCACTGCAATGCTGTTGTTTCGTTTTAATACATGGGAAAGACAGATTCAGCCAGAGACAAAGACATTCTGTTTTTATTTTCAACACACACTCTTAGAAGAAAAGGTTCTATATAGAAGCTTAAAGGGTTCCGTCAGGCACTTCATGATATATAGAACCATTTAGGGGTTCCATCAGGGATCATTTTATGGATTCGTTTAATTAGTAGTCGTAGACACCTATTGTAATCATTGGGGTTCTTATTATTCTTCTTCCGTTTCCACTTTTGAGTCCATGGCAGCCCATAGAACCGCTTGCGGGAAAGTTATGAAATTTGGCACACTGATAGAGGCCAGTTTGAACTGTGTCCATAACAAATTTGGAGTCTCTAACTCAAACCCTCTAGCGCCACCAGCACTCACATTTATGCTAAAAACTTTTGAACCGTAAGCACTCTATGATGTCATTTTCCGCCATTTTTCCGCCATTTTGAATTTTCCAAAAAAACTACTTTTTCGAACTCCTCCTAGGCCGTTACTCCGATTTTCACGAAAATTGAATCAGATCATCTTCAGACCATGCGGAATTCAAGTCGATTTGTCGAACCGTTTTCGAAAAGCACGCAAACGAATTTTAAGTAGTGCTTGCGGAAATAGACGTAAGGCTTTATCTCCTCAACCCTTTATTGTATTCAGACCAAACATGGTCCATGTCATCACAAGCATGACCGGAGGTAACATGTAAAAAAGTTATAATGAAATTTCGGCACAGCGCCACCTACTGGTCCGGAGATATGAAATATTGCTCTTTTTGCTTATAACTTCTGAACGGTTTGTCCAAAAATCATAAAAGTGGTCTCGTTAGAATTGGGGCATCAAGCTGAGTCGAACGACATCCAACTTTTCCATATCGGCCAATTTGCGCGTTAGCCATTTTGAATTTTGGCATAAAATGCTGTATTTTATGAACGCATTACCTCTCCTGCCTGGATGTGGCCGGTGGTCGGCGTGGCGACTGGACTCGGTGTGGCGCTTGTCGTGATCGTCCCGGTGGTGCTGATGTGGTTAAAGAGAAGACGACAGCGGCGGGAGGGAGGCGAGCGAGTGCGTCACAGGTCCACCGTCACTGAAAGCAATAATGGCAGCAAGGCCTGGACCCGCCGCTCTGAGGAGAAAAGAAGCCGATCAGGAAGAGATAAAGATAGAAATGGGATGAAGAAAAACAAGAAAGGAAAGGAATCAGGAAAAAGACGTAAGGAGCCCCTCGGCGAGGATGCTATCCGTATGCGGCCCCTGAGGAAGGAACTAGACATTGGAAGTGACACCGACGTGACCCAGAGCTCCATGGAGGACATCAATAAGACGATCTGTGACCACAGATCACCAGACCAAAAACACTTCCAACAGCCCCGCATGCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156831 lncRNA downstream 7867 108124 ~ 109084 (+) True G138060
TU156839 lncRNA downstream 11087 111344 ~ 113090 (+) True G138068
TU156850 lncRNA downstream 52031 152288 ~ 152795 (+) True G138077
TU156869 lncRNA downstream 85793 186050 ~ 186273 (+) True G138090
TU156872 lncRNA downstream 90923 191180 ~ 191429 (+) True G138093
CI01000027_00000579_00037786.mRNA mRNA upstream 1294 579 ~ 37852 (+) True CI01000027_00000579_00037786
CI01000027_00122108_00124986.mRNA mRNA downstream 21767 122024 ~ 124986 (+) True CI01000027_00122108_00124986
CI01000027_00229612_00237058.mRNA mRNA downstream 128748 229005 ~ 237759 (+) True CI01000027_00229612_00237058
CI01000027_00238851_00240657.mRNA mRNA downstream 138594 238851 ~ 240991 (+) False CI01000027_00238851_00240657
CI01000027_00250077_00273130.mRNA mRNA downstream 149499 249756 ~ 273130 (+) True CI01000027_00250077_00273130
CI01000027_00365674_00371897.mRNA mRNA downstream 264733 364990 ~ 371996 (+) True CI01000027_00365674_00371897
TU156938 other downstream 318037 418294 ~ 428676 (+) True CI01000027_00391159_00499309
TU157051 other downstream 729517 829774 ~ 831683 (+) True G138238
TU157065 other downstream 755131 855388 ~ 869575 (+) False G138247
TU157117 other downstream 895713 995970 ~ 999181 (+) True G138290
TU157281 other downstream 1406704 1506961 ~ 1507816 (+) True G138436

Expression Profile