RNA id: TU156828


Basic Information

Item Value
RNA id TU156828
length 686
RNA type TUCP
GC content 0.50
exon number 3
gene id G138057
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 93559 ~ 96727 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGACTGATAACACTGCATCATCTAACGAACCCGTCCAAGATCAGAAAGATCATCTTCAGATGAGAAGACACCAGGCCCTGGTGATTCAGACTCAAGGGGCCGAACAGTGTTATATCAAAAGAAAAGAAAGTCCTGATTGAGTTCTGCCATGCATCTGACAGCCAGATTAACCTTCCTCTTATGGTCTCTCTGCAGATTATCTGAAGCCTCTCCTAGTGATCCATACAGCAGCTGTAAGGTTGGAAAAATGTGCCAGGCCAAGTTTGGGAATGGAGAATGTGATGAGGAGTGCTTGAGTTCTGCCTGTCTGCATGATGGATTTGACTGCCTCAAAGAAAAAGGCCCCTGCATTTCAGGGCATATTCAATACTGTCGAAATCATTATGACAACGGTTACTGCGACCAGGGCTGCAACACCGCCCCCTGTGGGTGGGACGGCTCGGACTGCCACAAAAAGCAGTATCCCGCCTGGGCCAAAGGAAGCCTCATACTGCACACTAGAATCCCATTCCAGAGGGGTCAGTTCCAGAACGGCTCTCTGTTATGGGCCTTAAGCACTGTCCTCCAGACCAGCGTCAAACTCAGAGGAATGGCACCTCTCCAGCCCACCTCTGACCTTCTGACAATGGACACTCGACAGCTGGCGGAGCTGTACGCTCAAACAGCATCCTACGACAGCAATGAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156833 lncRNA upstream 4947 87492 ~ 88612 (+) True G138062
TU156794 lncRNA upstream 14694 77537 ~ 78865 (+) True G138029
TU156831 lncRNA downstream 11397 108124 ~ 109084 (+) True G138060
TU156839 lncRNA downstream 14617 111344 ~ 113090 (+) True G138068
TU156850 lncRNA downstream 55561 152288 ~ 152795 (+) True G138077
TU156869 lncRNA downstream 89323 186050 ~ 186273 (+) True G138090
TU156872 lncRNA downstream 94453 191180 ~ 191429 (+) True G138093
CI01000027_00089337_00092919.mRNA mRNA upstream 474 88779 ~ 93085 (+) False CI01000027_00089337_00092919
CI01000027_00000579_00037786.mRNA mRNA upstream 55707 579 ~ 37852 (+) True CI01000027_00000579_00037786
CI01000027_00122108_00124986.mRNA mRNA downstream 25297 122024 ~ 124986 (+) True CI01000027_00122108_00124986
CI01000027_00229612_00237058.mRNA mRNA downstream 132278 229005 ~ 237759 (+) True CI01000027_00229612_00237058
CI01000027_00238851_00240657.mRNA mRNA downstream 142124 238851 ~ 240991 (+) False CI01000027_00238851_00240657
CI01000027_00250077_00273130.mRNA mRNA downstream 153029 249756 ~ 273130 (+) True CI01000027_00250077_00273130
CI01000027_00365674_00371897.mRNA mRNA downstream 268263 364990 ~ 371996 (+) True CI01000027_00365674_00371897
TU156838 other upstream 3682 89314 ~ 89877 (+) True CI01000027_00089337_00092919
TU156938 other downstream 321567 418294 ~ 428676 (+) True CI01000027_00391159_00499309
TU157051 other downstream 733047 829774 ~ 831683 (+) True G138238
TU157065 other downstream 758661 855388 ~ 869575 (+) False G138247
TU157117 other downstream 899243 995970 ~ 999181 (+) True G138290
TU157281 other downstream 1410234 1506961 ~ 1507816 (+) True G138436

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00021585 True 2939 mRNA 0.52 11 NC_007127.7 48645217 ~ 48673938 (-)