Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU156839 |
| length | 1534 |
| lncRNA type | antisense_over |
| GC content | 0.42 |
| exon number | 2 |
| gene id | G138068 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 111344 ~ 113090 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU156831 | lncRNA | upstream | 2260 | 108124 ~ 109084 (+) | True | G138060 |
| TU156833 | lncRNA | upstream | 22732 | 87492 ~ 88612 (+) | True | G138062 |
| TU156794 | lncRNA | upstream | 32479 | 77537 ~ 78865 (+) | True | G138029 |
| TU156850 | lncRNA | downstream | 39198 | 152288 ~ 152795 (+) | True | G138077 |
| TU156869 | lncRNA | downstream | 72960 | 186050 ~ 186273 (+) | True | G138090 |
| TU156872 | lncRNA | downstream | 78090 | 191180 ~ 191429 (+) | True | G138093 |
| TU156874 | lncRNA | downstream | 83687 | 196777 ~ 197714 (+) | True | G138094 |
| TU156888 | lncRNA | downstream | 103198 | 216288 ~ 217000 (+) | True | G138104 |
| CI01000027_00089337_00092919.mRNA | mRNA | upstream | 18259 | 88779 ~ 93085 (+) | False | CI01000027_00089337_00092919 |
| CI01000027_00000579_00037786.mRNA | mRNA | upstream | 73492 | 579 ~ 37852 (+) | True | CI01000027_00000579_00037786 |
| CI01000027_00122108_00124986.mRNA | mRNA | downstream | 8934 | 122024 ~ 124986 (+) | True | CI01000027_00122108_00124986 |
| CI01000027_00229612_00237058.mRNA | mRNA | downstream | 115915 | 229005 ~ 237759 (+) | True | CI01000027_00229612_00237058 |
| CI01000027_00238851_00240657.mRNA | mRNA | downstream | 125761 | 238851 ~ 240991 (+) | False | CI01000027_00238851_00240657 |
| CI01000027_00250077_00273130.mRNA | mRNA | downstream | 136666 | 249756 ~ 273130 (+) | True | CI01000027_00250077_00273130 |
| CI01000027_00365674_00371897.mRNA | mRNA | downstream | 251900 | 364990 ~ 371996 (+) | True | CI01000027_00365674_00371897 |
| TU156795 | other | upstream | 11087 | 39146 ~ 100257 (+) | True | G138030 |
| TU156938 | other | downstream | 305204 | 418294 ~ 428676 (+) | True | CI01000027_00391159_00499309 |
| TU157051 | other | downstream | 716684 | 829774 ~ 831683 (+) | True | G138238 |
| TU157065 | other | downstream | 742298 | 855388 ~ 869575 (+) | False | G138247 |
| TU157117 | other | downstream | 882880 | 995970 ~ 999181 (+) | True | G138290 |
| TU157281 | other | downstream | 1393871 | 1506961 ~ 1507816 (+) | True | G138436 |
