RNA id: TU158137


Basic Information

Item Value
RNA id TU158137
length 237
lncRNA type intronic
GC content 0.27
exon number 1
gene id G139155
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 239440 ~ 239676 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTATGATATATATAAAAATTAATAAGATAAAGTAAAAATATATTATGTGTTGGGGAGGGAAAGTTGTAATTGTATTTTGTGTTGTTAATAAAAAGAGAATTATTTTTAAAATAAAAGAACAGAATCAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGGGAGGGAAGTTAATTGTATGTTGTGTTGTTTTAAATAAAAACAGACTTATAATAAAATAATATAGGCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158136 lncRNA downstream 44 238673 ~ 239396 (-) True G139154
TU158100 lncRNA downstream 23339 209732 ~ 216101 (-) True G139123
TU158098 lncRNA downstream 59969 178289 ~ 179471 (-) True CI01000027_00178291_00179467
TU158115 lncRNA downstream 93654 145381 ~ 145786 (-) True G139138
TU158045 lncRNA downstream 94841 137421 ~ 144599 (-) True CI01000027_00137910_00141799
TU158140 lncRNA upstream 1168 240844 ~ 241126 (-) True G139158
TU158142 lncRNA upstream 9447 249123 ~ 249388 (-) True G139160
TU158149 lncRNA upstream 14694 254370 ~ 254604 (-) True G139167
TU158150 lncRNA upstream 17906 257582 ~ 257809 (-) True G139168
TU158148 lncRNA upstream 21724 261400 ~ 613635 (-) True G139166
CI01000027_00178291_00179467.mRNA mRNA downstream 59973 178291 ~ 179467 (-) False CI01000027_00178291_00179467
CI01000027_00137910_00141799.mRNA mRNA downstream 96163 137292 ~ 143277 (-) False CI01000027_00137910_00141799
CI01000027_00131884_00132650.mRNA mRNA downstream 106790 131395 ~ 132650 (-) False CI01000027_00131884_00132650
CI01000027_00108990_00118237.mRNA mRNA downstream 121032 108119 ~ 118408 (-) False CI01000027_00108990_00118237
CI01000027_00078634_00087807.mRNA mRNA downstream 150721 78492 ~ 88719 (-) True CI01000027_00078634_00087807
CI01000027_00332200_00343377.mRNA mRNA upstream 92306 331982 ~ 344039 (-) False CI01000027_00332200_00343377
CI01000027_00645077_00650763.mRNA mRNA upstream 405318 644994 ~ 651285 (-) False CI01000027_00645077_00650763
CI01000027_00701871_00719591.mRNA mRNA upstream 462090 701766 ~ 719591 (-) True CI01000027_00701871_00719591
CI01000027_00742700_00758723.mRNA mRNA upstream 502955 742631 ~ 758723 (-) False CI01000027_00742700_00758723
CI01000027_00798826_00806532.mRNA mRNA upstream 559010 798686 ~ 806532 (-) True CI01000027_00798826_00806532
TU158094 other downstream 1861 234212 ~ 237579 (-) True G139117
TU158093 other downstream 3845 234212 ~ 235595 (-) False G139117
TU158095 other downstream 105638 133679 ~ 133802 (-) True G139118
TU158026 other downstream 121137 117298 ~ 117373 (-) True G139084
TU158036 other downstream 126360 108126 ~ 113080 (-) False CI01000027_00108990_00118237
TU158434 other upstream 1004959 1246564 ~ 1246684 (-) False G139420
TU158436 other upstream 1004959 1246564 ~ 1246977 (-) True G139420
TU158463 other upstream 1062358 1302034 ~ 1320161 (-) True CI01000027_01303308_01319462
TU158538 other upstream 1882454 2125857 ~ 2126028 (-) True G139505
TU158517 other upstream 1986949 2227919 ~ 2228025 (-) True G139484

Expression Profile