RNA id: TU158142


Basic Information

Item Value
RNA id TU158142
length 266
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G139160
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 249123 ~ 249388 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGCAGTCATTCAAGACTTAATATCTGCTAACGCTTTATTTTGATGCTCTTCAACAGACATTCTAGTGACTATGAGTAACTTTGCAACTACATGTCTACGACTTATTCTTCTAACCTGAACCCTAACCTAACAGTCTACTAATACTCAGAGTTAGCTGAGGTGCAAAGTTACTTATAGTAGAATGTCTAAAGTGGACAATCTAAATAAAGTGTAACCTTCCATTTAACCATATTAATTTACAAATTAAAGTTCTCTTCTCCTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158140 lncRNA downstream 7997 240844 ~ 241126 (-) True G139158
TU158137 lncRNA downstream 9447 239440 ~ 239676 (-) True G139155
TU158136 lncRNA downstream 9727 238673 ~ 239396 (-) True G139154
TU158100 lncRNA downstream 33022 209732 ~ 216101 (-) True G139123
TU158098 lncRNA downstream 69652 178289 ~ 179471 (-) True CI01000027_00178291_00179467
TU158149 lncRNA upstream 4982 254370 ~ 254604 (-) True G139167
TU158150 lncRNA upstream 8194 257582 ~ 257809 (-) True G139168
TU158148 lncRNA upstream 12012 261400 ~ 613635 (-) True G139166
TU158188 lncRNA upstream 93907 365714 ~ 411921 (-) True G139206
TU158199 lncRNA upstream 194490 443878 ~ 454608 (-) True G139215
CI01000027_00178291_00179467.mRNA mRNA downstream 69656 178291 ~ 179467 (-) False CI01000027_00178291_00179467
CI01000027_00137910_00141799.mRNA mRNA downstream 105846 137292 ~ 143277 (-) False CI01000027_00137910_00141799
CI01000027_00131884_00132650.mRNA mRNA downstream 116473 131395 ~ 132650 (-) False CI01000027_00131884_00132650
CI01000027_00108990_00118237.mRNA mRNA downstream 130715 108119 ~ 118408 (-) False CI01000027_00108990_00118237
CI01000027_00078634_00087807.mRNA mRNA downstream 160404 78492 ~ 88719 (-) True CI01000027_00078634_00087807
CI01000027_00332200_00343377.mRNA mRNA upstream 82594 331982 ~ 344039 (-) False CI01000027_00332200_00343377
CI01000027_00645077_00650763.mRNA mRNA upstream 395606 644994 ~ 651285 (-) False CI01000027_00645077_00650763
CI01000027_00701871_00719591.mRNA mRNA upstream 452378 701766 ~ 719591 (-) True CI01000027_00701871_00719591
CI01000027_00742700_00758723.mRNA mRNA upstream 493243 742631 ~ 758723 (-) False CI01000027_00742700_00758723
CI01000027_00798826_00806532.mRNA mRNA upstream 549298 798686 ~ 806532 (-) True CI01000027_00798826_00806532
TU158094 other downstream 11544 234212 ~ 237579 (-) True G139117
TU158093 other downstream 13528 234212 ~ 235595 (-) False G139117
TU158095 other downstream 115321 133679 ~ 133802 (-) True G139118
TU158026 other downstream 130820 117298 ~ 117373 (-) True G139084
TU158036 other downstream 136043 108126 ~ 113080 (-) False CI01000027_00108990_00118237
TU158434 other upstream 995247 1246564 ~ 1246684 (-) False G139420
TU158436 other upstream 995247 1246564 ~ 1246977 (-) True G139420
TU158463 other upstream 1052646 1302034 ~ 1320161 (-) True CI01000027_01303308_01319462
TU158538 other upstream 1872742 2125857 ~ 2126028 (-) True G139505
TU158517 other upstream 1977237 2227919 ~ 2228025 (-) True G139484

Expression Profile