RNA id: TU158203


Basic Information

Item Value
RNA id TU158203
length 223
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G139219
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 474446 ~ 477358 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCCCAGACCTTCAGGATATCGTGTGACGCTTCCGTGTCAAAAGCCAAGAACTGCAGACTGACAGTGTTGCCGGTGTCCACCTCGATGGTCCATGTGCAACGGAGGTTGTTGTCATACGGAAAGGGGTATCCGGGAGACAGTATCCGTCCGGATGACTCACCTTTAAAACTTCCCCCACACTCCGCTACAATAGATCAAAACAAGAAGTTATTGCACCGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158201 lncRNA downstream 12888 460571 ~ 461558 (-) True G139217
TU158199 lncRNA downstream 19838 443878 ~ 454608 (-) True G139215
TU158188 lncRNA downstream 62525 365714 ~ 411921 (-) True G139206
TU158150 lncRNA downstream 216637 257582 ~ 257809 (-) True G139168
TU158149 lncRNA downstream 219842 254370 ~ 254604 (-) True G139167
TU158204 lncRNA upstream 9886 487244 ~ 509661 (-) True G139220
TU158212 lncRNA upstream 31042 508400 ~ 509457 (-) True G139228
TU158278 lncRNA upstream 143316 620674 ~ 623127 (-) True G139294
TU158259 lncRNA upstream 166883 644241 ~ 645445 (-) True CI01000027_00645077_00650763
TU158316 lncRNA upstream 270633 749277 ~ 749330 (-) True G139324
CI01000027_00332200_00343377.mRNA mRNA downstream 130407 331982 ~ 344039 (-) False CI01000027_00332200_00343377
CI01000027_00178291_00179467.mRNA mRNA downstream 294979 178291 ~ 179467 (-) False CI01000027_00178291_00179467
CI01000027_00137910_00141799.mRNA mRNA downstream 331169 137292 ~ 143277 (-) False CI01000027_00137910_00141799
CI01000027_00131884_00132650.mRNA mRNA downstream 341796 131395 ~ 132650 (-) False CI01000027_00131884_00132650
CI01000027_00108990_00118237.mRNA mRNA downstream 356038 108119 ~ 118408 (-) False CI01000027_00108990_00118237
CI01000027_00645077_00650763.mRNA mRNA upstream 167636 644994 ~ 651285 (-) False CI01000027_00645077_00650763
CI01000027_00701871_00719591.mRNA mRNA upstream 224408 701766 ~ 719591 (-) True CI01000027_00701871_00719591
CI01000027_00742700_00758723.mRNA mRNA upstream 265273 742631 ~ 758723 (-) False CI01000027_00742700_00758723
CI01000027_00798826_00806532.mRNA mRNA upstream 321328 798686 ~ 806532 (-) True CI01000027_00798826_00806532
CI01000027_00808322_00809068.mRNA mRNA upstream 330710 808068 ~ 809068 (-) True CI01000027_00808322_00809068
TU158094 other downstream 236867 234212 ~ 237579 (-) True G139117
TU158093 other downstream 238851 234212 ~ 235595 (-) False G139117
TU158095 other downstream 340644 133679 ~ 133802 (-) True G139118
TU158026 other downstream 356143 117298 ~ 117373 (-) True G139084
TU158036 other downstream 361366 108126 ~ 113080 (-) False CI01000027_00108990_00118237
TU158434 other upstream 767277 1246564 ~ 1246684 (-) False G139420
TU158436 other upstream 767277 1246564 ~ 1246977 (-) True G139420
TU158463 other upstream 824676 1302034 ~ 1320161 (-) True CI01000027_01303308_01319462
TU158538 other upstream 1644772 2125857 ~ 2126028 (-) True G139505
TU158517 other upstream 1749267 2227919 ~ 2228025 (-) True G139484

Expression Profile