RNA id: TU157005


Basic Information

Item Value
RNA id TU157005
length 1013
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G138207
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 673651 ~ 718459 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATTGTAACTGCATGGAAGAGAGCACATGGTGATCAGTGTACATATTTATTTTATGGAGAACAAGGACAATTCATTCTAAAGAAACTGCTTGTTTGTGTTTTGTATCAGGACTAAAAGATCCAGCGAAACTGATGTCTACTGTTCCGTGTCTAACAACTTCACAAAGCTACACAATGCAGAATGTAAGTGTTTTATAACTGATGTCTGAGGCTGCACATCATGCTTGGCATCGCAAGCCACCAGTTACAAAAGAATTAGGACACAAATCTATGACAATGCCAAAACAAGTCCAATTTATTGCCAAATTCTGTGCATGACCTGGGAAGCTTTATTATGCATTTCTAAGAGACCCATATTGTGTGATCACAGACAGTGCTTGGCATTTCACAACCGGCAGACCCTTTCTGCCTATATAATAGCTTAATATATATAATAGATCAAGATGGCGCTGCGAATGGCAGCCTCGATATGGATCTCTCCAATTCTTTTTTTAGTCATTCTTTTCCTATGAGTTTCACCAGAGATGAACTACTGGACATAAGGCAAGACACACCAGACAACATGTTTTACTGCAGGTTTTTTTTTTTTTTTTTTGCATCACAGCTAAATGAATGGGTAGCATTTCAGCTGGAGTCCATTTACAACTAAAGCTCTGTGAAATGTCGTGTCGAAACAGAAGAGTGTAAGTGGCGTGCCAAGATTTTTTGAGCGGTTATTAACATGTTGCACCCCACATATGCATTAGAATATTGGTTGCTGATGTATTCTGGGTGGTTGCTAGGTTATTTCTTATTGACCCAAGTCACAGGTGTGTGTTTATCAGCATTTTACATCATCTTCAAACATGGCTATTCATAATTTAGAATTAAGAATTATCTGAAACTGTTCTGTTTAATATAGGTTTTAATTTACATGGTTTTAAATGCACAGTGAACACTGCAGTGCACTGAACCCAGAACTGAGTGACCACGAGCAAAGATGGCTGCATGCAGATCACATACTAGTTANNNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156941 lncRNA upstream 28200 643621 ~ 645451 (+) True G138155
TU156899 lncRNA upstream 426069 245883 ~ 247582 (+) True G138115
TU156898 lncRNA upstream 428343 244016 ~ 245308 (+) True G138114
TU156837 lncRNA upstream 432866 238874 ~ 240785 (+) True CI01000027_00238851_00240657
TU156891 lncRNA upstream 455021 218387 ~ 218630 (+) True G138107
TU157010 lncRNA downstream 11360 686349 ~ 691537 (+) True G138212
TU156994 lncRNA downstream 24863 699852 ~ 742852 (+) True G138200
TU157034 lncRNA downstream 134668 809657 ~ 809941 (+) True G138229
TU157038 lncRNA downstream 139592 814581 ~ 814806 (+) True G138233
TU157039 lncRNA downstream 141005 815994 ~ 821269 (+) True G138234
CI01000027_00637372_00642483.mRNA mRNA upstream 31009 637372 ~ 642642 (+) True CI01000027_00637372_00642483
CI01000027_00527282_00534071.mRNA mRNA upstream 138596 526867 ~ 535055 (+) True CI01000027_00527282_00534071
CI01000027_00505199_00523652.mRNA mRNA upstream 149999 504270 ~ 523652 (+) True CI01000027_00505199_00523652
CI01000027_00391159_00499309.mRNA mRNA upstream 173891 390683 ~ 499760 (+) False CI01000027_00391159_00499309
CI01000027_00365674_00371897.mRNA mRNA upstream 301655 364990 ~ 371996 (+) True CI01000027_00365674_00371897
CI01000027_00681087_00701456.mRNA mRNA downstream 6098 681087 ~ 701547 (+) False CI01000027_00681087_00701456
CI01000027_00738809_00739296.mRNA mRNA downstream 63015 738004 ~ 740394 (+) True CI01000027_00738809_00739296
CI01000027_00765527_00776450.mRNA mRNA downstream 90478 765467 ~ 776763 (+) True CI01000027_00765527_00776450
CI01000027_00779517_00795032.mRNA mRNA downstream 103965 778954 ~ 795389 (+) True CI01000027_00779517_00795032
CI01000027_00909268_00918831.mRNA mRNA downstream 233524 908513 ~ 919213 (+) True CI01000027_00909268_00918831
TU156938 other upstream 244975 418294 ~ 428676 (+) True CI01000027_00391159_00499309
TU156795 other upstream 573394 39146 ~ 100257 (+) True G138030
TU157051 other downstream 154785 829774 ~ 831683 (+) True G138238
TU157065 other downstream 180399 855388 ~ 869575 (+) False G138247
TU157117 other downstream 320981 995970 ~ 999181 (+) True G138290
TU157281 other downstream 831972 1506961 ~ 1507816 (+) True G138436
TU157376 other downstream 989419 1664408 ~ 1676860 (+) False G138515

Expression Profile