RNA id: TU157034


Basic Information

Item Value
RNA id TU157034
length 285
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G138229
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 809657 ~ 809941 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAGACTTTCAAATCACATGAGCAATTCACAATAGAATATAGATAACATAACAAATGTTTAAACGAAGAAATTTTACAGTTTTATCCACTAAATGAGCTCATTTCAAATTTGATGCCTGCTACAGGTCTCAAAAAAGTTGGCACGGGGGCAACAAATGGCTGAAAAAGCAAGAAATTTTGAAAAGATTCAGCTGGGAGAACATCTAGCAACTAATTAATTTAATTGATATCAGGTCTGTAACATGATTAGCTATAAAAGGGATGTCTTAGAGAGGCAGAGTCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156993 lncRNA upstream 66805 650189 ~ 742852 (+) False G138200
TU156994 lncRNA upstream 66805 699852 ~ 742852 (+) True G138200
TU157002 lncRNA upstream 91198 673651 ~ 718459 (+) False G138207
TU157003 lncRNA upstream 91198 673651 ~ 718459 (+) False G138207
TU157004 lncRNA upstream 91198 673651 ~ 718459 (+) False G138207
TU157038 lncRNA downstream 4640 814581 ~ 814806 (+) True G138233
TU157039 lncRNA downstream 6053 815994 ~ 821269 (+) True G138234
TU157064 lncRNA downstream 49401 859342 ~ 883513 (+) False G138247
TU157066 lncRNA downstream 66428 876369 ~ 893121 (+) True G138247
TU157091 lncRNA downstream 123802 933743 ~ 934498 (+) True G138267
CI01000027_00779517_00795032.mRNA mRNA upstream 14268 778954 ~ 795389 (+) True CI01000027_00779517_00795032
CI01000027_00765527_00776450.mRNA mRNA upstream 32894 765467 ~ 776763 (+) True CI01000027_00765527_00776450
CI01000027_00738809_00739296.mRNA mRNA upstream 69263 738004 ~ 740394 (+) True CI01000027_00738809_00739296
CI01000027_00681087_00701456.mRNA mRNA upstream 108110 681087 ~ 701547 (+) False CI01000027_00681087_00701456
CI01000027_00637372_00642483.mRNA mRNA upstream 167015 637372 ~ 642642 (+) True CI01000027_00637372_00642483
CI01000027_00909268_00918831.mRNA mRNA downstream 98572 908513 ~ 919213 (+) True CI01000027_00909268_00918831
CI01000027_00949578_00953698.mRNA mRNA downstream 138780 948721 ~ 954281 (+) True CI01000027_00949578_00953698
CI01000027_00980123_00987611.mRNA mRNA downstream 169214 979155 ~ 987884 (+) True CI01000027_00980123_00987611
CI01000027_01033975_01037549.mRNA mRNA downstream 222962 1032903 ~ 1037922 (+) True CI01000027_01033975_01037549
CI01000027_01045587_01050470.mRNA mRNA downstream 233451 1043392 ~ 1050863 (+) True CI01000027_01045587_01050470
TU156938 other upstream 380981 418294 ~ 428676 (+) True CI01000027_00391159_00499309
TU156795 other upstream 709400 39146 ~ 100257 (+) True G138030
TU157051 other downstream 19833 829774 ~ 831683 (+) True G138238
TU157065 other downstream 45447 855388 ~ 869575 (+) False G138247
TU157117 other downstream 186029 995970 ~ 999181 (+) True G138290
TU157281 other downstream 697020 1506961 ~ 1507816 (+) True G138436
TU157376 other downstream 854467 1664408 ~ 1676860 (+) False G138515

Expression Profile