RNA id: TU157064


Basic Information

Item Value
RNA id TU157064
length 936
lncRNA type antisense_over
GC content 0.52
exon number 4
gene id G138247
representative False

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 855388 ~ 893121 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGACGGATGGACAAACAGACAGATAGATAGACAGAATGATAGATATATAGACAGAAAGACAGACAGACAGACAGACAGACAGACAGACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGAAGGAACGGTAGACAGAACAGTAAATAGACAGATAGATAAATAGAATGATAGAATACCTGCTTCACAGGATGTGGGACACTCTGTCCATTCACTGAAGGGTGTCACTATACAGTCTCTCTTACAGGGCAGCAGACAGGGTCGTACTGACTCTGGCCGAGGGGCTTCAGGACATTTTTTGGGTGGCACCTGTCCGACATTGACCTTTACGCAGATGACCTTGCGCGTTTGCACGCCCATTGTGCAGGTGGACTTGTCTGCGCTGGAGGAGGTATTGAGGGTGGATGTGGTGGTGTCCTCCACGCACTGTCCCCAGGGGCCCGTCTGCCAGTGATACACGATGCAAGGATGCTCATTACAGTTCCGCACCTCCTGTAGGGCGCTGGTGTTCGGACAGCTGGAACCTCCTTCTCCTGCATTGTAAGCCAGAATGGCTCTGGTTCTCATCTGCTTGCCCTCGGCGGTTTTGCTGGAGCAGGTCTGGGAGCAGGTGGACCATTCAGTCCAGAGACTGAGAGCACAGTCTTTAGGGCAGGGAACCATACAGGGCACAGATGCAGGGTAGACCTCATCCGCACACATCTCCCTCTCCACCTCTGTACCTTCATTGTTGACGCAGCGGACCTGTGGAATCTGAGTTCCCTCTCCGCAGTCCATGTCTTCTTCAGGGATACACTCCTCTAGCTTGACCAGCTGCCAGTTAAAACAGCTGGGATCATCGCACGGGATGGCCTCCACCAGGTGAGGACAGCTCCCCTCACCACCCGTGGGGTCATTAGTTATTGTACGTCGTCTGAACTTGAAACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157039 lncRNA upstream 38073 815994 ~ 821269 (+) True G138234
TU157038 lncRNA upstream 44536 814581 ~ 814806 (+) True G138233
TU157034 lncRNA upstream 49401 809657 ~ 809941 (+) True G138229
TU156994 lncRNA upstream 116490 699852 ~ 742852 (+) True G138200
TU157010 lncRNA upstream 167805 686349 ~ 691537 (+) True G138212
TU157091 lncRNA downstream 50230 933743 ~ 934498 (+) True G138267
TU157101 lncRNA downstream 85428 968941 ~ 969167 (+) True G138277
TU157127 lncRNA downstream 100944 984457 ~ 984699 (+) True G138300
TU157136 lncRNA downstream 120480 1003993 ~ 1004346 (+) True G138309
TU157138 lncRNA downstream 129364 1012877 ~ 1013154 (+) True G138311
CI01000027_00779517_00795032.mRNA mRNA upstream 63953 778954 ~ 795389 (+) True CI01000027_00779517_00795032
CI01000027_00765527_00776450.mRNA mRNA upstream 82579 765467 ~ 776763 (+) True CI01000027_00765527_00776450
CI01000027_00738809_00739296.mRNA mRNA upstream 118948 738004 ~ 740394 (+) True CI01000027_00738809_00739296
CI01000027_00681087_00701456.mRNA mRNA upstream 157795 681087 ~ 701547 (+) False CI01000027_00681087_00701456
CI01000027_00637372_00642483.mRNA mRNA upstream 216700 637372 ~ 642642 (+) True CI01000027_00637372_00642483
CI01000027_00909268_00918831.mRNA mRNA downstream 25000 908513 ~ 919213 (+) True CI01000027_00909268_00918831
CI01000027_00949578_00953698.mRNA mRNA downstream 65208 948721 ~ 954281 (+) True CI01000027_00949578_00953698
CI01000027_00980123_00987611.mRNA mRNA downstream 95642 979155 ~ 987884 (+) True CI01000027_00980123_00987611
CI01000027_01033975_01037549.mRNA mRNA downstream 149390 1032903 ~ 1037922 (+) True CI01000027_01033975_01037549
CI01000027_01045587_01050470.mRNA mRNA downstream 159879 1043392 ~ 1050863 (+) True CI01000027_01045587_01050470
TU157051 other upstream 27659 829774 ~ 831683 (+) True G138238
TU156938 other upstream 430666 418294 ~ 428676 (+) True CI01000027_00391159_00499309
TU156795 other upstream 759085 39146 ~ 100257 (+) True G138030
TU157117 other downstream 112457 995970 ~ 999181 (+) True G138290
TU157281 other downstream 623448 1506961 ~ 1507816 (+) True G138436
TU157376 other downstream 780895 1664408 ~ 1676860 (+) False G138515
TU157841 other downstream 2600874 3484387 ~ 3486647 (+) True G138915
TU157886 other downstream 2618559 3502072 ~ 3520065 (+) True G138953

Expression Profile