RNA id: TU157091


Basic Information

Item Value
RNA id TU157091
length 278
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G138267
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 933743 ~ 934498 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGATTTATCTCAACAAACACACACCTCACTTCCTCTACAGCCCTCCCAACATCTGGACCTTTCCGTCATTTTTCCCATTTAATCACGCTTAAAGGTTGAATGAGTATTCGCTGAATCCACCCTGGTGGGATTAGAGCTGTAATCGCAATAGGAGGGGCTCTGAGATGGGTAGGAAGACACAAATCAGGAATTTTAAAAGAAACGCTGCAGATAAAGATGTTTTGTGAAAATATGTAACAGCTTGGAGTGTAATTACCAGACTAAAACAATGAAAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157066 lncRNA upstream 40622 876369 ~ 893121 (+) True G138247
TU157064 lncRNA upstream 50230 859342 ~ 883513 (+) False G138247
TU157039 lncRNA upstream 112474 815994 ~ 821269 (+) True G138234
TU157038 lncRNA upstream 118937 814581 ~ 814806 (+) True G138233
TU157034 lncRNA upstream 123802 809657 ~ 809941 (+) True G138229
TU157101 lncRNA downstream 34443 968941 ~ 969167 (+) True G138277
TU157127 lncRNA downstream 49959 984457 ~ 984699 (+) True G138300
TU157136 lncRNA downstream 69495 1003993 ~ 1004346 (+) True G138309
TU157138 lncRNA downstream 78379 1012877 ~ 1013154 (+) True G138311
TU157139 lncRNA downstream 80546 1015044 ~ 1015245 (+) True G138312
CI01000027_00909268_00918831.mRNA mRNA upstream 14530 908513 ~ 919213 (+) True CI01000027_00909268_00918831
CI01000027_00779517_00795032.mRNA mRNA upstream 138354 778954 ~ 795389 (+) True CI01000027_00779517_00795032
CI01000027_00765527_00776450.mRNA mRNA upstream 156980 765467 ~ 776763 (+) True CI01000027_00765527_00776450
CI01000027_00738809_00739296.mRNA mRNA upstream 193349 738004 ~ 740394 (+) True CI01000027_00738809_00739296
CI01000027_00681087_00701456.mRNA mRNA upstream 232196 681087 ~ 701547 (+) False CI01000027_00681087_00701456
CI01000027_00949578_00953698.mRNA mRNA downstream 14223 948721 ~ 954281 (+) True CI01000027_00949578_00953698
CI01000027_00980123_00987611.mRNA mRNA downstream 44657 979155 ~ 987884 (+) True CI01000027_00980123_00987611
CI01000027_01033975_01037549.mRNA mRNA downstream 98405 1032903 ~ 1037922 (+) True CI01000027_01033975_01037549
CI01000027_01045587_01050470.mRNA mRNA downstream 108894 1043392 ~ 1050863 (+) True CI01000027_01045587_01050470
CI01000027_01089832_01104918.mRNA mRNA downstream 155334 1089832 ~ 1104980 (+) True CI01000027_01089832_01104918
TU157065 other upstream 64168 855388 ~ 869575 (+) False G138247
TU157051 other upstream 102060 829774 ~ 831683 (+) True G138238
TU156938 other upstream 505067 418294 ~ 428676 (+) True CI01000027_00391159_00499309
TU156828 other upstream 837016 93559 ~ 96727 (+) True G138057
TU156838 other upstream 843866 89314 ~ 89877 (+) True CI01000027_00089337_00092919
TU157117 other downstream 61472 995970 ~ 999181 (+) True G138290
TU157281 other downstream 572463 1506961 ~ 1507816 (+) True G138436
TU157376 other downstream 729910 1664408 ~ 1676860 (+) False G138515
TU157841 other downstream 2549889 3484387 ~ 3486647 (+) True G138915
TU157886 other downstream 2567574 3502072 ~ 3520065 (+) True G138953

Expression Profile