RNA id: TU157117



Basic Information


Item Value
RNA id TU157117
length 718
RNA type TUCP
GC content 0.39
exon number 5
gene id G138290
representative True

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 995970 ~ 999181 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACTTGGATATTATTGATAGTGGGTGGAGATGTTATTCCTTGAGACTTAACATTTCAGTCTCTGTTGAAGGTAATTCAGTTAGCTTCCACGGGTTTGAAGAGGTGCTTGAGGACTGGACAAAGACTGCTTACGGACCCCTCTGCTGAGATCTCTGGAACACAAAGTCAGTTTGTTTTCACAGTTTAGAAGAGGAGCATTGCAAGGAAAATGGGATCACCTCACTCAAAGCGCAAGTCTAAATCACAACATAGATCGCATGAATCATCCAAGTCAGTTTCCAGGCATGTGCTTGACCCTGTGGAAATTGCTGGCATTCCTACTTATTCGGTGAGCAATGCGTTGGTTCCGTCACATAGTAACAACAGCATCCAGAGGTCTATGAATGTACCAAGAAATGGGGCAATGACTCGACATTACAACAACTTTGATCAAGGTGTTGAAACATATCAACGTATAGTCATGAAGAACGGCCGGCCTGTTGAAACTGAAGAATACAGGATTTATTCAACTGATTAAAGCCTACTTGAAACTATGTCATGTCATCACATTAATTTAGATATGTAATTGCTTATGTAATGAAAATATGTGTACTAATGATGGCATCCAGCCAGCATCCAGAGGTCTATGGATATTCCAAGAAATGAGACTGAAGAATTCATGTTTTATTGGCTGCTTAAAAATAGGGAAAATATTTTTAATATATATATATATATATATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU157127 lncRNA upstream 11271 984457 ~ 984699 (+) True G138300
TU157101 lncRNA upstream 26803 968941 ~ 969167 (+) True G138277
TU157091 lncRNA upstream 61472 933743 ~ 934498 (+) True G138267
TU157066 lncRNA upstream 102849 876369 ~ 893121 (+) True G138247
TU157064 lncRNA upstream 112457 859342 ~ 883513 (+) False G138247
TU157136 lncRNA downstream 4812 1003993 ~ 1004346 (+) True G138309
TU157138 lncRNA downstream 13696 1012877 ~ 1013154 (+) True G138311
TU157139 lncRNA downstream 15863 1015044 ~ 1015245 (+) True G138312
TU157116 lncRNA downstream 22340 1021521 ~ 1024940 (+) True G138289
TU157102 lncRNA downstream 180729 1179910 ~ 1181519 (+) True G138278
CI01000027_00980123_00987611.mRNA mRNA upstream 8086 979155 ~ 987884 (+) True CI01000027_00980123_00987611
CI01000027_00949578_00953698.mRNA mRNA upstream 41689 948721 ~ 954281 (+) True CI01000027_00949578_00953698
CI01000027_00909268_00918831.mRNA mRNA upstream 76757 908513 ~ 919213 (+) True CI01000027_00909268_00918831
CI01000027_00779517_00795032.mRNA mRNA upstream 200581 778954 ~ 795389 (+) True CI01000027_00779517_00795032
CI01000027_00765527_00776450.mRNA mRNA upstream 219207 765467 ~ 776763 (+) True CI01000027_00765527_00776450
CI01000027_01033975_01037549.mRNA mRNA downstream 33722 1032903 ~ 1037922 (+) True CI01000027_01033975_01037549
CI01000027_01045587_01050470.mRNA mRNA downstream 44211 1043392 ~ 1050863 (+) True CI01000027_01045587_01050470
CI01000027_01089832_01104918.mRNA mRNA downstream 90651 1089832 ~ 1104980 (+) True CI01000027_01089832_01104918
CI01000027_01119958_01123077.mRNA mRNA downstream 120249 1119430 ~ 1123099 (+) True CI01000027_01119958_01123077
CI01000027_01134221_01143363.mRNA mRNA downstream 132976 1132157 ~ 1143526 (+) True CI01000027_01134221_01143363
TU157065 other upstream 126395 855388 ~ 869575 (+) False G138247
TU157051 other upstream 164287 829774 ~ 831683 (+) True G138238
TU156938 other upstream 567294 418294 ~ 428676 (+) True CI01000027_00391159_00499309
TU156795 other upstream 895713 39146 ~ 100257 (+) True G138030
TU157281 other downstream 507780 1506961 ~ 1507816 (+) True G138436
TU157376 other downstream 665227 1664408 ~ 1676860 (+) False G138515
TU157841 other downstream 2485206 3484387 ~ 3486647 (+) True G138915
TU157886 other downstream 2502891 3502072 ~ 3520065 (+) True G138953
TU159628 other downstream 3738217 4737398 ~ 4774262 (+) False G140436

Expression Profile