RNA id: TU157139


Basic Information

Item Value
RNA id TU157139
length 202
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G138312
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1015044 ~ 1015245 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATGCACTTATGCACCCCCATACCATCAGAGATGCTGGCTTTTGAACTGAATGCTGATAACACGCTGGAAGGTCTCCCTTCTCTTTAGCCCGGAGGACACGGCGTCCGTGATTTCCAACAAGAATGTCAAATTTGGACTCGTCTGACCATAGAACACTTTTCCACTTTGAAACAGTCCATTTTAAATGAGCCTTGGCCCACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157138 lncRNA upstream 1890 1012877 ~ 1013154 (+) True G138311
TU157136 lncRNA upstream 10698 1003993 ~ 1004346 (+) True G138309
TU157127 lncRNA upstream 30345 984457 ~ 984699 (+) True G138300
TU157101 lncRNA upstream 45877 968941 ~ 969167 (+) True G138277
TU157091 lncRNA upstream 80546 933743 ~ 934498 (+) True G138267
TU157116 lncRNA downstream 6276 1021521 ~ 1024940 (+) True G138289
TU157102 lncRNA downstream 164665 1179910 ~ 1181519 (+) True G138278
TU157177 lncRNA downstream 199203 1214448 ~ 1214747 (+) True G138350
TU157182 lncRNA downstream 203408 1218653 ~ 1218878 (+) True G138355
TU157186 lncRNA downstream 205627 1220872 ~ 1225465 (+) True G138357
CI01000027_00980123_00987611.mRNA mRNA upstream 27160 979155 ~ 987884 (+) True CI01000027_00980123_00987611
CI01000027_00949578_00953698.mRNA mRNA upstream 60763 948721 ~ 954281 (+) True CI01000027_00949578_00953698
CI01000027_00909268_00918831.mRNA mRNA upstream 95831 908513 ~ 919213 (+) True CI01000027_00909268_00918831
CI01000027_00779517_00795032.mRNA mRNA upstream 219655 778954 ~ 795389 (+) True CI01000027_00779517_00795032
CI01000027_00765527_00776450.mRNA mRNA upstream 238281 765467 ~ 776763 (+) True CI01000027_00765527_00776450
CI01000027_01033975_01037549.mRNA mRNA downstream 17658 1032903 ~ 1037922 (+) True CI01000027_01033975_01037549
CI01000027_01045587_01050470.mRNA mRNA downstream 28147 1043392 ~ 1050863 (+) True CI01000027_01045587_01050470
CI01000027_01089832_01104918.mRNA mRNA downstream 74587 1089832 ~ 1104980 (+) True CI01000027_01089832_01104918
CI01000027_01119958_01123077.mRNA mRNA downstream 104185 1119430 ~ 1123099 (+) True CI01000027_01119958_01123077
CI01000027_01134221_01143363.mRNA mRNA downstream 116912 1132157 ~ 1143526 (+) True CI01000027_01134221_01143363
TU157117 other upstream 15863 995970 ~ 999181 (+) True G138290
TU157065 other upstream 145469 855388 ~ 869575 (+) False G138247
TU157051 other upstream 183361 829774 ~ 831683 (+) True G138238
TU156938 other upstream 586368 418294 ~ 428676 (+) True CI01000027_00391159_00499309
TU156828 other upstream 918317 93559 ~ 96727 (+) True G138057
TU157281 other downstream 491716 1506961 ~ 1507816 (+) True G138436
TU157376 other downstream 649163 1664408 ~ 1676860 (+) False G138515
TU157841 other downstream 2469142 3484387 ~ 3486647 (+) True G138915
TU157886 other downstream 2486827 3502072 ~ 3520065 (+) True G138953
TU159628 other downstream 3722153 4737398 ~ 4774262 (+) False G140436

Expression Profile