RNA id: TU158380


Basic Information

Item Value
RNA id TU158380
length 313
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G139382
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1108550 ~ 1108876 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTTGTTCTAGAACTAGGATATACCTTTCAGCATTGATGGTGCCTTTCCAGATGTGTAAGCTGCCCATGCCACACGCACTCATGCAACCCCATACCATCAGAGATGCAGGCTTCTGAACTGAGCGCTGATAACAACTTGGGTTGTCCTTGTCCTCTTTAGTCCGGATGACATGGCGTCCCAATTTTCCAAAAAGAACTTCAAATTTTGATTCGTCTGACCACAGAACAGTTTTCCACTTTGCCACAGTCCATTTTAAATGAGCCTTGGCCCAGAGAAAACGCCTGCGCTTCTGGATCGTGTTTAGATATGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158373 lncRNA downstream 13307 1089832 ~ 1095257 (-) True G139375
TU158371 lncRNA downstream 64185 1044041 ~ 1044379 (-) True G139373
TU158362 lncRNA downstream 78689 1028269 ~ 1029875 (-) True G139364
TU158358 lncRNA downstream 101142 1007194 ~ 1007422 (-) True G139360
TU158357 lncRNA downstream 103153 1005169 ~ 1005411 (-) True G139359
TU158409 lncRNA upstream 51170 1160046 ~ 1160265 (-) True G139405
TU158410 lncRNA upstream 51516 1160392 ~ 1160644 (-) True G139406
TU158413 lncRNA upstream 101370 1210246 ~ 1210464 (-) True G139409
TU158414 lncRNA upstream 102509 1211385 ~ 1211600 (-) True G139410
TU158419 lncRNA upstream 107994 1216870 ~ 1217069 (-) True G139412
CI01000027_01082314_01087880.mRNA mRNA downstream 19960 1081949 ~ 1088604 (-) False CI01000027_01082314_01087880
CI01000027_01078554_01079951.mRNA mRNA downstream 28613 1078436 ~ 1079951 (-) True CI01000027_01078554_01079951
CI01000027_01072444_01076227.mRNA mRNA downstream 32337 1072015 ~ 1076227 (-) True CI01000027_01072444_01076227
CI01000027_01059994_01067301.mRNA mRNA downstream 41203 1058928 ~ 1067361 (-) True CI01000027_01059994_01067301
CI01000027_00823197_00901936.mRNA mRNA downstream 206628 822225 ~ 901936 (-) True CI01000027_00823197_00901936
CI01000027_01111716_01114630.mRNA mRNA upstream 2802 1111678 ~ 1115560 (-) True CI01000027_01111716_01114630
CI01000027_01198110_01199285.mRNA mRNA upstream 88614 1197490 ~ 1200933 (-) True CI01000027_01198110_01199285
CI01000027_01204940_01206121.mRNA mRNA upstream 95593 1204469 ~ 1206319 (-) True CI01000027_01204940_01206121
CI01000027_01232167_01232844.mRNA mRNA upstream 122681 1231557 ~ 1234381 (-) True CI01000027_01232167_01232844
CI01000027_01241417_01245177.mRNA mRNA upstream 132461 1241337 ~ 1246267 (-) False CI01000027_01241417_01245177
TU158094 other downstream 870985 234212 ~ 237579 (-) True G139117
TU158093 other downstream 872969 234212 ~ 235595 (-) False G139117
TU158095 other downstream 974762 133679 ~ 133802 (-) True G139118
TU158026 other downstream 990261 117298 ~ 117373 (-) True G139084
TU158036 other downstream 995484 108126 ~ 113080 (-) False CI01000027_00108990_00118237
TU158434 other upstream 135759 1246564 ~ 1246684 (-) False G139420
TU158436 other upstream 135759 1246564 ~ 1246977 (-) True G139420
TU158463 other upstream 193158 1302034 ~ 1320161 (-) True CI01000027_01303308_01319462
TU158538 other upstream 1013254 2125857 ~ 2126028 (-) True G139505
TU158517 other upstream 1117749 2227919 ~ 2228025 (-) True G139484

Expression Profile