Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU157125 |
| length | 655 |
| lncRNA type | inter_gene |
| GC content | 0.38 |
| exon number | 2 |
| gene id | G138298 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 1235859 ~ 1236549 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU157186 | lncRNA | upstream | 10394 | 1220872 ~ 1225465 (+) | True | G138357 |
| TU157182 | lncRNA | upstream | 16981 | 1218653 ~ 1218878 (+) | True | G138355 |
| TU157177 | lncRNA | upstream | 21112 | 1214448 ~ 1214747 (+) | True | G138350 |
| TU157102 | lncRNA | upstream | 54340 | 1179910 ~ 1181519 (+) | True | G138278 |
| TU157116 | lncRNA | upstream | 210919 | 1021521 ~ 1024940 (+) | True | G138289 |
| TU157189 | lncRNA | downstream | 1200 | 1237749 ~ 1238319 (+) | True | G138360 |
| TU157107 | lncRNA | downstream | 10174 | 1246723 ~ 1250610 (+) | True | G138282 |
| TU157209 | lncRNA | downstream | 58905 | 1295454 ~ 1295822 (+) | True | G138376 |
| TU157242 | lncRNA | downstream | 116155 | 1352704 ~ 1352908 (+) | True | G138407 |
| TU157257 | lncRNA | downstream | 141557 | 1378106 ~ 1378854 (+) | True | G138415 |
| CI01000027_01176638_01185141.mRNA | mRNA | upstream | 50552 | 1175836 ~ 1185307 (+) | False | CI01000027_01176638_01185141 |
| CI01000027_01162273_01168513.mRNA | mRNA | upstream | 67202 | 1162273 ~ 1168657 (+) | True | CI01000027_01162273_01168513 |
| CI01000027_01153787_01158632.mRNA | mRNA | upstream | 76858 | 1153787 ~ 1159001 (+) | True | CI01000027_01153787_01158632 |
| CI01000027_01148208_01150893.mRNA | mRNA | upstream | 84942 | 1148058 ~ 1150917 (+) | True | CI01000027_01148208_01150893 |
| CI01000027_01134221_01143363.mRNA | mRNA | upstream | 92333 | 1132157 ~ 1143526 (+) | True | CI01000027_01134221_01143363 |
| CI01000027_01413155_01416305.mRNA | mRNA | downstream | 176552 | 1413101 ~ 1417658 (+) | True | CI01000027_01413155_01416305 |
| CI01000027_01519267_01519711.mRNA | mRNA | downstream | 282718 | 1519267 ~ 1519776 (+) | True | CI01000027_01519267_01519711 |
| CI01000027_01543335_01543974.mRNA | mRNA | downstream | 306786 | 1543335 ~ 1544229 (+) | True | CI01000027_01543335_01543974 |
| CI01000027_01546280_01571152.mRNA | mRNA | downstream | 309194 | 1545743 ~ 1571220 (+) | True | CI01000027_01546280_01571152 |
| CI01000027_01572250_01574108.mRNA | mRNA | downstream | 335344 | 1571893 ~ 1574410 (+) | True | CI01000027_01572250_01574108 |
| TU157117 | other | upstream | 236678 | 995970 ~ 999181 (+) | True | G138290 |
| TU157065 | other | upstream | 366284 | 855388 ~ 869575 (+) | False | G138247 |
| TU157051 | other | upstream | 404176 | 829774 ~ 831683 (+) | True | G138238 |
| TU156938 | other | upstream | 807183 | 418294 ~ 428676 (+) | True | CI01000027_00391159_00499309 |
| TU156828 | other | upstream | 1139132 | 93559 ~ 96727 (+) | True | G138057 |
| TU157281 | other | downstream | 270412 | 1506961 ~ 1507816 (+) | True | G138436 |
| TU157376 | other | downstream | 427859 | 1664408 ~ 1676860 (+) | False | G138515 |
| TU157841 | other | downstream | 2247838 | 3484387 ~ 3486647 (+) | True | G138915 |
| TU157886 | other | downstream | 2265523 | 3502072 ~ 3520065 (+) | True | G138953 |
| TU159628 | other | downstream | 3500849 | 4737398 ~ 4774262 (+) | False | G140436 |
