RNA id: TU157242


Basic Information

Item Value
RNA id TU157242
length 205
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G138407
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1352704 ~ 1352908 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGAAAGGTAGCGTACATTTAATACTAAATTCTACATCTACTGTAGATTATTCTCTAGGTGTTGCTTTATGCACGTTCATAACAAAATCTCCTCATCGTCAGAACTTACTAAGTATCACTGAGAGAAAATAAGTAAGGGATGCAGTTAGCCCATTATTATTACAAAACAAGCATGACCCCCACACAAAGTGGATGTTAATTTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157209 lncRNA upstream 56882 1295454 ~ 1295822 (+) True G138376
TU157107 lncRNA upstream 102094 1246723 ~ 1250610 (+) True G138282
TU157189 lncRNA upstream 114385 1237749 ~ 1238319 (+) True G138360
TU157125 lncRNA upstream 116155 1235859 ~ 1236549 (+) True G138298
TU157186 lncRNA upstream 127239 1220872 ~ 1225465 (+) True G138357
TU157257 lncRNA downstream 25198 1378106 ~ 1378854 (+) True G138415
TU157298 lncRNA downstream 106387 1459295 ~ 1459570 (+) True G138453
TU157299 lncRNA downstream 106859 1459767 ~ 1459984 (+) True G138454
TU157300 lncRNA downstream 107332 1460240 ~ 1460456 (+) True G138455
TU157275 lncRNA downstream 108273 1461181 ~ 1462819 (+) True G138430
CI01000027_01176638_01185141.mRNA mRNA upstream 167397 1175836 ~ 1185307 (+) False CI01000027_01176638_01185141
CI01000027_01162273_01168513.mRNA mRNA upstream 184047 1162273 ~ 1168657 (+) True CI01000027_01162273_01168513
CI01000027_01153787_01158632.mRNA mRNA upstream 193703 1153787 ~ 1159001 (+) True CI01000027_01153787_01158632
CI01000027_01148208_01150893.mRNA mRNA upstream 201787 1148058 ~ 1150917 (+) True CI01000027_01148208_01150893
CI01000027_01134221_01143363.mRNA mRNA upstream 209178 1132157 ~ 1143526 (+) True CI01000027_01134221_01143363
CI01000027_01413155_01416305.mRNA mRNA downstream 60193 1413101 ~ 1417658 (+) True CI01000027_01413155_01416305
CI01000027_01519267_01519711.mRNA mRNA downstream 166359 1519267 ~ 1519776 (+) True CI01000027_01519267_01519711
CI01000027_01543335_01543974.mRNA mRNA downstream 190427 1543335 ~ 1544229 (+) True CI01000027_01543335_01543974
CI01000027_01546280_01571152.mRNA mRNA downstream 192835 1545743 ~ 1571220 (+) True CI01000027_01546280_01571152
CI01000027_01572250_01574108.mRNA mRNA downstream 218985 1571893 ~ 1574410 (+) True CI01000027_01572250_01574108
TU157117 other upstream 353523 995970 ~ 999181 (+) True G138290
TU157065 other upstream 483129 855388 ~ 869575 (+) False G138247
TU157051 other upstream 521021 829774 ~ 831683 (+) True G138238
TU156938 other upstream 924028 418294 ~ 428676 (+) True CI01000027_00391159_00499309
TU156828 other upstream 1255977 93559 ~ 96727 (+) True G138057
TU157281 other downstream 154053 1506961 ~ 1507816 (+) True G138436
TU157376 other downstream 311500 1664408 ~ 1676860 (+) False G138515
TU157841 other downstream 2131479 3484387 ~ 3486647 (+) True G138915
TU157886 other downstream 2149164 3502072 ~ 3520065 (+) True G138953
TU159628 other downstream 3384490 4737398 ~ 4774262 (+) False G140436

Expression Profile