RNA id: TU157337


Basic Information

Item Value
RNA id TU157337
length 278
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G138491
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1582033 ~ 1582333 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATGTTACTGCTGTTTGTTAGCTTTCAATATACGGTTTTATCCTGATTAAAGCTTTACTGTAGCATTTTTGTAAAGGTATCATTACATTTATAGCATGAACAACTGTTTGTCCATGAACATAGAAGTTTGTTGAAGTATGCAATAGAATTTAGCTAACTGGCTAGCGAAGCAAAAACGCGTTGGTCTTTGTTTACGTCCTTGATGCAACCAAAAATAGCAACATAATACATTTAAAAGACATGTACAAACAATAAAACATACATACAGTTAGGGGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157320 lncRNA upstream 48611 1532970 ~ 1533422 (+) True G138475
TU157319 lncRNA upstream 52107 1529721 ~ 1529926 (+) True G138474
TU157275 lncRNA upstream 119214 1461181 ~ 1462819 (+) True G138430
TU157300 lncRNA upstream 121577 1460240 ~ 1460456 (+) True G138455
TU157299 lncRNA upstream 122049 1459767 ~ 1459984 (+) True G138454
TU157341 lncRNA downstream 10942 1593275 ~ 1596468 (+) False G138494
TU157342 lncRNA downstream 12468 1594801 ~ 1596468 (+) True G138494
TU157359 lncRNA downstream 50491 1632824 ~ 1647449 (+) False G138508
TU157360 lncRNA downstream 50491 1632824 ~ 1647449 (+) False G138508
TU157361 lncRNA downstream 50491 1632824 ~ 1647449 (+) False G138508
CI01000027_01572250_01574108.mRNA mRNA upstream 7623 1571893 ~ 1574410 (+) True CI01000027_01572250_01574108
CI01000027_01546280_01571152.mRNA mRNA upstream 10813 1545743 ~ 1571220 (+) True CI01000027_01546280_01571152
CI01000027_01543335_01543974.mRNA mRNA upstream 37804 1543335 ~ 1544229 (+) True CI01000027_01543335_01543974
CI01000027_01519267_01519711.mRNA mRNA upstream 62257 1519267 ~ 1519776 (+) True CI01000027_01519267_01519711
CI01000027_01413155_01416305.mRNA mRNA upstream 164375 1413101 ~ 1417658 (+) True CI01000027_01413155_01416305
CI01000027_01767031_01767683.mRNA mRNA downstream 184274 1766607 ~ 1767863 (+) True CI01000027_01767031_01767683
CI01000027_01811625_01827803.mRNA mRNA downstream 227424 1809757 ~ 1828182 (+) False CI01000027_01811625_01827803
CI01000027_01843365_01850501.mRNA mRNA downstream 261032 1843365 ~ 1850501 (+) True CI01000027_01843365_01850501
CI01000027_01850735_01853042.mRNA mRNA downstream 268402 1850735 ~ 1853513 (+) True CI01000027_01850735_01853042
CI01000027_01865502_01875022.mRNA mRNA downstream 283169 1865502 ~ 1876939 (+) False CI01000027_01865502_01875022
TU157281 other upstream 74217 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 582852 995970 ~ 999181 (+) True G138290
TU157065 other upstream 712458 855388 ~ 869575 (+) False G138247
TU157051 other upstream 750350 829774 ~ 831683 (+) True G138238
TU156938 other upstream 1153357 418294 ~ 428676 (+) True CI01000027_00391159_00499309
TU157376 other downstream 82075 1664408 ~ 1676860 (+) False G138515
TU157841 other downstream 1902054 3484387 ~ 3486647 (+) True G138915
TU157886 other downstream 1919739 3502072 ~ 3520065 (+) True G138953
TU159628 other downstream 3155065 4737398 ~ 4774262 (+) False G140436
TU159629 other downstream 3155065 4737398 ~ 4774262 (+) False G140436

Expression Profile