RNA id: TU157341


Basic Information

Item Value
RNA id TU157341
length 320
lncRNA type antisense_over
GC content 0.63
exon number 2
gene id G138494
representative False

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1593275 ~ 1596468 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATGGAATCACCCAGGAGAACTGGAGCGTACCGAGACTGTACAGGCTGAGCGCTCCGTAGTCGAAGAAGTAGCAGATGTGACGTGCCTCGGCCGACCTGGTGGATGTCAAAGAGCTGCGGAAGTCTGACGCTCAGCATGTCTGCGGGAAGGCGCAGTGCTCCCCTCCCTCTCTGACAGGCCTGCTTAAGTCTCTCCCTTCCTCCTCGACACAGGACGCACCACAGCGGACACTCCAGGCCCCGGGACGGGCCCCCTTCCCCAGCCTCCCACCTCACACACTGAGCCCAGCCCCAACCATGACCCTCACCAGTCCCCCGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157337 lncRNA upstream 10942 1582033 ~ 1582333 (+) True G138491
TU157320 lncRNA upstream 59853 1532970 ~ 1533422 (+) True G138475
TU157319 lncRNA upstream 63349 1529721 ~ 1529926 (+) True G138474
TU157275 lncRNA upstream 130456 1461181 ~ 1462819 (+) True G138430
TU157300 lncRNA upstream 132819 1460240 ~ 1460456 (+) True G138455
TU157359 lncRNA downstream 36356 1632824 ~ 1647449 (+) False G138508
TU157360 lncRNA downstream 36356 1632824 ~ 1647449 (+) False G138508
TU157361 lncRNA downstream 36356 1632824 ~ 1647449 (+) False G138508
TU157363 lncRNA downstream 36356 1632824 ~ 1647449 (+) True G138508
TU157373 lncRNA downstream 65417 1661885 ~ 1663849 (+) True G138514
CI01000027_01572250_01574108.mRNA mRNA upstream 18865 1571893 ~ 1574410 (+) True CI01000027_01572250_01574108
CI01000027_01546280_01571152.mRNA mRNA upstream 22055 1545743 ~ 1571220 (+) True CI01000027_01546280_01571152
CI01000027_01543335_01543974.mRNA mRNA upstream 49046 1543335 ~ 1544229 (+) True CI01000027_01543335_01543974
CI01000027_01519267_01519711.mRNA mRNA upstream 73499 1519267 ~ 1519776 (+) True CI01000027_01519267_01519711
CI01000027_01413155_01416305.mRNA mRNA upstream 175617 1413101 ~ 1417658 (+) True CI01000027_01413155_01416305
CI01000027_01767031_01767683.mRNA mRNA downstream 170139 1766607 ~ 1767863 (+) True CI01000027_01767031_01767683
CI01000027_01811625_01827803.mRNA mRNA downstream 213289 1809757 ~ 1828182 (+) False CI01000027_01811625_01827803
CI01000027_01843365_01850501.mRNA mRNA downstream 246897 1843365 ~ 1850501 (+) True CI01000027_01843365_01850501
CI01000027_01850735_01853042.mRNA mRNA downstream 254267 1850735 ~ 1853513 (+) True CI01000027_01850735_01853042
CI01000027_01865502_01875022.mRNA mRNA downstream 269034 1865502 ~ 1876939 (+) False CI01000027_01865502_01875022
TU157281 other upstream 85459 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 594094 995970 ~ 999181 (+) True G138290
TU157065 other upstream 723700 855388 ~ 869575 (+) False G138247
TU157051 other upstream 761592 829774 ~ 831683 (+) True G138238
TU156938 other upstream 1164599 418294 ~ 428676 (+) True CI01000027_00391159_00499309
TU157376 other downstream 67940 1664408 ~ 1676860 (+) False G138515
TU157841 other downstream 1887919 3484387 ~ 3486647 (+) True G138915
TU157886 other downstream 1905604 3502072 ~ 3520065 (+) True G138953
TU159628 other downstream 3140930 4737398 ~ 4774262 (+) False G140436
TU159629 other downstream 3140930 4737398 ~ 4774262 (+) False G140436

Expression Profile