Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU157363 |
| length | 14371 |
| lncRNA type | inter_gene |
| GC content | 0.38 |
| exon number | 4 |
| gene id | G138508 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 1632824 ~ 1647449 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU157341 | lncRNA | upstream | 36356 | 1593275 ~ 1596468 (+) | False | G138494 |
| TU157342 | lncRNA | upstream | 36356 | 1594801 ~ 1596468 (+) | True | G138494 |
| TU157337 | lncRNA | upstream | 50491 | 1582033 ~ 1582333 (+) | True | G138491 |
| TU157320 | lncRNA | upstream | 99402 | 1532970 ~ 1533422 (+) | True | G138475 |
| TU157319 | lncRNA | upstream | 102898 | 1529721 ~ 1529926 (+) | True | G138474 |
| TU157373 | lncRNA | downstream | 14436 | 1661885 ~ 1663849 (+) | True | G138514 |
| TU157374 | lncRNA | downstream | 17842 | 1665291 ~ 1666433 (+) | True | G138515 |
| TU157380 | lncRNA | downstream | 26187 | 1673636 ~ 1704490 (+) | True | G138519 |
| TU157408 | lncRNA | downstream | 92706 | 1740155 ~ 1749656 (+) | True | G138541 |
| TU157412 | lncRNA | downstream | 95607 | 1743056 ~ 1743838 (+) | True | G138545 |
| CI01000027_01572250_01574108.mRNA | mRNA | upstream | 58414 | 1571893 ~ 1574410 (+) | True | CI01000027_01572250_01574108 |
| CI01000027_01546280_01571152.mRNA | mRNA | upstream | 61604 | 1545743 ~ 1571220 (+) | True | CI01000027_01546280_01571152 |
| CI01000027_01543335_01543974.mRNA | mRNA | upstream | 88595 | 1543335 ~ 1544229 (+) | True | CI01000027_01543335_01543974 |
| CI01000027_01519267_01519711.mRNA | mRNA | upstream | 113048 | 1519267 ~ 1519776 (+) | True | CI01000027_01519267_01519711 |
| CI01000027_01413155_01416305.mRNA | mRNA | upstream | 215166 | 1413101 ~ 1417658 (+) | True | CI01000027_01413155_01416305 |
| CI01000027_01767031_01767683.mRNA | mRNA | downstream | 119158 | 1766607 ~ 1767863 (+) | True | CI01000027_01767031_01767683 |
| CI01000027_01811625_01827803.mRNA | mRNA | downstream | 162308 | 1809757 ~ 1828182 (+) | False | CI01000027_01811625_01827803 |
| CI01000027_01843365_01850501.mRNA | mRNA | downstream | 195916 | 1843365 ~ 1850501 (+) | True | CI01000027_01843365_01850501 |
| CI01000027_01850735_01853042.mRNA | mRNA | downstream | 203286 | 1850735 ~ 1853513 (+) | True | CI01000027_01850735_01853042 |
| CI01000027_01865502_01875022.mRNA | mRNA | downstream | 218053 | 1865502 ~ 1876939 (+) | False | CI01000027_01865502_01875022 |
| TU157281 | other | upstream | 125008 | 1506961 ~ 1507816 (+) | True | G138436 |
| TU157117 | other | upstream | 633643 | 995970 ~ 999181 (+) | True | G138290 |
| TU157065 | other | upstream | 763249 | 855388 ~ 869575 (+) | False | G138247 |
| TU157051 | other | upstream | 801141 | 829774 ~ 831683 (+) | True | G138238 |
| TU156938 | other | upstream | 1204148 | 418294 ~ 428676 (+) | True | CI01000027_00391159_00499309 |
| TU157376 | other | downstream | 16959 | 1664408 ~ 1676860 (+) | False | G138515 |
| TU157841 | other | downstream | 1836938 | 3484387 ~ 3486647 (+) | True | G138915 |
| TU157886 | other | downstream | 1854623 | 3502072 ~ 3520065 (+) | True | G138953 |
| TU159628 | other | downstream | 3089949 | 4737398 ~ 4774262 (+) | False | G140436 |
| TU159629 | other | downstream | 3089949 | 4737398 ~ 4774262 (+) | False | G140436 |
