RNA id: TU157374


Basic Information

Item Value
RNA id TU157374
length 755
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G138515
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1664408 ~ 1676860 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTAACTTAAAATATTGCCAAAATCTTACCTAGACAAGCTTTTGCGTTAGGAGTTTGCATACAATGTCTTAAAATTCTGTCTAGGTAGGTTTTTGAGCATACTTACAAACATACATTATTCAAATAAAGTGCTACCTTTGCCTTCCCTGTGCTCTGCAGGATGTGCACCAGAGCACAGGCCACTTCCTCTTTGCTCTTGACACTCAGCAGTGGCTCCAGAACCGCGCACAGAGTTCGGTAGTTGTTGGTGACATACTCGGCAAACTCTTTATACAGCTCCATTGGCAGGATGCTCATGGTCTGAAAGCGCGACTTGAGCCGCAGGGAAGCGTTGATGATTTTGCCCCCTCCCACACCGCCACCCTTGGCCAGGACGCTGGGCTGAATGACGGGGTACCATTGCTCCACAAACTGACGACCAGTGATGCTGGAAATGGGGATGCTGACCAAGCCCAGGTATGTGCTCTTCTCCTTGCGTCTTTTTTTGTCCGTCTCTTTGTAAAGATGAAGGCGGAGGTTGCGGACAGCTGGCAGGTTGTTGAACTCAAAGTGCTCACCCCAGAACACAGTATCGGTTCGGGGTTTGCTGGTGGTGCGGGCATAAAGCATGTCATCCAAACACAGTTCACAATAATATCGCTTTTTGGGTGGGAGTTCACGGGCCTCGATGATCCACAGCTTCAGAACATTGTCGACACGTCGACTGTTGTCCTGAGTGTGGGAAACACATAATCAGATTTGCATCATACATAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157373 lncRNA upstream 1442 1661885 ~ 1663849 (+) True G138514
TU157359 lncRNA upstream 17842 1632824 ~ 1647449 (+) False G138508
TU157360 lncRNA upstream 17842 1632824 ~ 1647449 (+) False G138508
TU157361 lncRNA upstream 17842 1632824 ~ 1647449 (+) False G138508
TU157363 lncRNA upstream 17842 1632824 ~ 1647449 (+) True G138508
TU157380 lncRNA downstream 7203 1673636 ~ 1704490 (+) True G138519
TU157408 lncRNA downstream 73722 1740155 ~ 1749656 (+) True G138541
TU157412 lncRNA downstream 76623 1743056 ~ 1743838 (+) True G138545
TU157442 lncRNA downstream 86773 1753206 ~ 1756788 (+) True G138573
TU157431 lncRNA downstream 92957 1759390 ~ 1759412 (+) True G138563
CI01000027_01572250_01574108.mRNA mRNA upstream 90881 1571893 ~ 1574410 (+) True CI01000027_01572250_01574108
CI01000027_01546280_01571152.mRNA mRNA upstream 94071 1545743 ~ 1571220 (+) True CI01000027_01546280_01571152
CI01000027_01543335_01543974.mRNA mRNA upstream 121062 1543335 ~ 1544229 (+) True CI01000027_01543335_01543974
CI01000027_01519267_01519711.mRNA mRNA upstream 145515 1519267 ~ 1519776 (+) True CI01000027_01519267_01519711
CI01000027_01413155_01416305.mRNA mRNA upstream 247633 1413101 ~ 1417658 (+) True CI01000027_01413155_01416305
CI01000027_01767031_01767683.mRNA mRNA downstream 100174 1766607 ~ 1767863 (+) True CI01000027_01767031_01767683
CI01000027_01811625_01827803.mRNA mRNA downstream 143324 1809757 ~ 1828182 (+) False CI01000027_01811625_01827803
CI01000027_01843365_01850501.mRNA mRNA downstream 176932 1843365 ~ 1850501 (+) True CI01000027_01843365_01850501
CI01000027_01850735_01853042.mRNA mRNA downstream 184302 1850735 ~ 1853513 (+) True CI01000027_01850735_01853042
CI01000027_01865502_01875022.mRNA mRNA downstream 199069 1865502 ~ 1876939 (+) False CI01000027_01865502_01875022
TU157281 other upstream 157475 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 666110 995970 ~ 999181 (+) True G138290
TU157065 other upstream 795716 855388 ~ 869575 (+) False G138247
TU157051 other upstream 833608 829774 ~ 831683 (+) True G138238
TU156938 other upstream 1236615 418294 ~ 428676 (+) True CI01000027_00391159_00499309
TU157841 other downstream 1817954 3484387 ~ 3486647 (+) True G138915
TU157886 other downstream 1835639 3502072 ~ 3520065 (+) True G138953
TU159628 other downstream 3070965 4737398 ~ 4774262 (+) False G140436
TU159629 other downstream 3070965 4737398 ~ 4774262 (+) False G140436
TU159630 other downstream 3070965 4737398 ~ 4774262 (+) True G140436

Expression Profile