RNA id: TU157380


Basic Information

Item Value
RNA id TU157380
length 306
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G138519
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1673636 ~ 1704490 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGAGGACCAGGCCTGGACTTTATTTTGTTTTATTATGTTTGTGTGGCCGGCAGACGTCCGCGAGGGTCTGCCGGCATTACTTTCGTTTTGTTCTTTGTTTATTTTATTAAAGTTTATTGTTTGAACGTTCGCCGGTTCCCGCCTCCTTCTTCCCCCATCATACGAACTGTGTTACAACATTATTACAAGCTTAGCGTTATGAATCAGGCTAAGGTAAGGAGATAGTTTTGAACACTGGCTGGTTAAATACTTGCTCAAAAATTTATTTTGGATCATTTTTAACCAAAAAAGTTACGGACTGCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157374 lncRNA upstream 7203 1665291 ~ 1666433 (+) True G138515
TU157373 lncRNA upstream 9787 1661885 ~ 1663849 (+) True G138514
TU157359 lncRNA upstream 26187 1632824 ~ 1647449 (+) False G138508
TU157408 lncRNA downstream 35665 1740155 ~ 1749656 (+) True G138541
TU157412 lncRNA downstream 38566 1743056 ~ 1743838 (+) True G138545
TU157442 lncRNA downstream 48716 1753206 ~ 1756788 (+) True G138573
TU157431 lncRNA downstream 54900 1759390 ~ 1759412 (+) True G138563
TU157464 lncRNA downstream 85266 1789756 ~ 1793380 (+) True G138594
CI01000027_01572250_01574108.mRNA mRNA upstream 99226 1571893 ~ 1574410 (+) True CI01000027_01572250_01574108
CI01000027_01546280_01571152.mRNA mRNA upstream 102416 1545743 ~ 1571220 (+) True CI01000027_01546280_01571152
CI01000027_01543335_01543974.mRNA mRNA upstream 129407 1543335 ~ 1544229 (+) True CI01000027_01543335_01543974
CI01000027_01519267_01519711.mRNA mRNA upstream 153860 1519267 ~ 1519776 (+) True CI01000027_01519267_01519711
CI01000027_01413155_01416305.mRNA mRNA upstream 255978 1413101 ~ 1417658 (+) True CI01000027_01413155_01416305
CI01000027_01767031_01767683.mRNA mRNA downstream 62117 1766607 ~ 1767863 (+) True CI01000027_01767031_01767683
CI01000027_01811625_01827803.mRNA mRNA downstream 105267 1809757 ~ 1828182 (+) False CI01000027_01811625_01827803
CI01000027_01843365_01850501.mRNA mRNA downstream 138875 1843365 ~ 1850501 (+) True CI01000027_01843365_01850501
CI01000027_01850735_01853042.mRNA mRNA downstream 146245 1850735 ~ 1853513 (+) True CI01000027_01850735_01853042
CI01000027_01865502_01875022.mRNA mRNA downstream 161012 1865502 ~ 1876939 (+) False CI01000027_01865502_01875022
TU157281 other upstream 165820 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 674455 995970 ~ 999181 (+) True G138290
TU157065 other upstream 804061 855388 ~ 869575 (+) False G138247
TU157051 other upstream 841953 829774 ~ 831683 (+) True G138238
TU156938 other upstream 1244960 418294 ~ 428676 (+) True CI01000027_00391159_00499309
TU157841 other downstream 1779897 3484387 ~ 3486647 (+) True G138915
TU157886 other downstream 1797582 3502072 ~ 3520065 (+) True G138953
TU159628 other downstream 3032908 4737398 ~ 4774262 (+) False G140436
TU159629 other downstream 3032908 4737398 ~ 4774262 (+) False G140436
TU159630 other downstream 3032908 4737398 ~ 4774262 (+) True G140436

Expression Profile