RNA id: TU157572


Basic Information

Item Value
RNA id TU157572
length 356
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G138686
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 2052580 ~ 2052935 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCACGTGCTGCTGCAAGCGGAATTCCACACTTTCCTCATCCTAACGTTACATTCATGCACGCTCACTTCTGCTTTTTAATAGTGACAAGGATAATATCCAATACGAGGCGATGAGGCTTATGTTAATCAATTTAATCCCAAATGCGTGCCGTGTGAGCACGTGTATTTTTTTCGAAATGAAACTAACTGCATGACATTTTTTAGTCAACTTAGTCAAAGTATGTGATTTATTTCTGTTCACGATTGTTAGCAGAATGTTCCCCAGTATGTATGGGGGGGAGATTTATAGAAAAGGAAATGATAAACCAAACATAGATGCACATGCTTTGAAAGATGTGAATCAACAAGTTATTACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157506 lncRNA upstream 86974 1965332 ~ 1965606 (+) True G138627
TU157504 lncRNA upstream 90724 1961552 ~ 1961856 (+) True G138625
TU157420 lncRNA upstream 102971 1937925 ~ 1949609 (+) True CI01000027_01937897_01954661
TU157490 lncRNA upstream 141029 1911283 ~ 1911551 (+) True G138612
TU157488 lncRNA upstream 143112 1909242 ~ 1909468 (+) True G138610
TU157558 lncRNA downstream 24145 2077080 ~ 2082052 (+) True G138672
TU157579 lncRNA downstream 66263 2119198 ~ 2119793 (+) True G138693
TU157535 lncRNA downstream 96394 2149329 ~ 2153741 (+) True G138649
TU157542 lncRNA downstream 101634 2154569 ~ 2155082 (+) True G138656
TU157550 lncRNA downstream 200613 2253548 ~ 2253749 (+) True G138664
CI01000027_02040721_02047487.mRNA mRNA upstream 5014 2040621 ~ 2047566 (+) True CI01000027_02040721_02047487
CI01000027_02034579_02038173.mRNA mRNA upstream 13526 2034360 ~ 2039054 (+) True CI01000027_02034579_02038173
CI01000027_01998746_02018404.mRNA mRNA upstream 33791 1998672 ~ 2018789 (+) True CI01000027_01998746_02018404
CI01000027_01982332_01985064.mRNA mRNA upstream 67423 1982034 ~ 1985157 (+) True CI01000027_01982332_01985064
CI01000027_01976509_01978931.mRNA mRNA upstream 71859 1976448 ~ 1980721 (+) True CI01000027_01976509_01978931
CI01000027_02059709_02072254.mRNA mRNA downstream 6442 2059377 ~ 2072405 (+) True CI01000027_02059709_02072254
CI01000027_02083444_02085743.mRNA mRNA downstream 30208 2083143 ~ 2085780 (+) True CI01000027_02083444_02085743
CI01000027_02106256_02118045.mRNA mRNA downstream 53250 2106185 ~ 2118498 (+) True CI01000027_02106256_02118045
CI01000027_02125080_02146147.mRNA mRNA downstream 71899 2124834 ~ 2146502 (+) True CI01000027_02125080_02146147
CI01000027_02156853_02161914.mRNA mRNA downstream 103918 2156853 ~ 2162004 (+) True CI01000027_02156853_02161914
TU157376 other upstream 375720 1664408 ~ 1676860 (+) False G138515
TU157281 other upstream 544764 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 1053399 995970 ~ 999181 (+) True G138290
TU157065 other upstream 1183005 855388 ~ 869575 (+) False G138247
TU157051 other upstream 1220897 829774 ~ 831683 (+) True G138238
TU157841 other downstream 1431452 3484387 ~ 3486647 (+) True G138915
TU157886 other downstream 1449137 3502072 ~ 3520065 (+) True G138953
TU159628 other downstream 2684463 4737398 ~ 4774262 (+) False G140436
TU159629 other downstream 2684463 4737398 ~ 4774262 (+) False G140436
TU159630 other downstream 2684463 4737398 ~ 4774262 (+) True G140436

Expression Profile