RNA id: TU158771


Basic Information

Item Value
RNA id TU158771
length 296
lncRNA type antisense_over
GC content 0.36
exon number 1
gene id G139704
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 2422905 ~ 2423200 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCTAATGGTAATAAACAATATTTTTTTCTTCTAATTTAAAAAAAAGAAAAGAAAAAAAAGAAGCATTTTATTACTGAAAAACATTGCACACATCAGCTTAATGCAGAAACATAAACTACAATTTCTTTCAGATAAAATAAGACCAACTGCGGTCTGTGTGCTTGTCCTCCTTTTAGCAAGCAGAAATGTTGTTAGTGGAAGGTTGCTAAAAGACATCGCAGACAAGACAGAACACACCCCACGAGACAAGACAGAGTGCTACGGCCCCTGGCAACCAGCCCAACTTATTAAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158726 lncRNA downstream 126571 2295470 ~ 2296334 (-) True G139659
TU158678 lncRNA downstream 267868 2154577 ~ 2155037 (-) True G139620
TU158515 lncRNA downstream 280993 2137431 ~ 2141912 (-) True G139482
TU158675 lncRNA downstream 315933 2106019 ~ 2106972 (-) True G139617
TU158495 lncRNA downstream 345343 2072090 ~ 2077562 (-) True G139462
TU158772 lncRNA upstream 2520 2425720 ~ 2426596 (-) True G139705
TU158697 lncRNA upstream 36065 2460776 ~ 2461106 (-) True G139631
TU158786 lncRNA upstream 47926 2471126 ~ 2493630 (-) True G139717
TU158840 lncRNA upstream 182394 2605594 ~ 2605959 (-) True G139771
TU158842 lncRNA upstream 187255 2610455 ~ 2610710 (-) True G139773
CI01000027_02314898_02317288.mRNA mRNA downstream 105597 2314551 ~ 2317308 (-) True CI01000027_02314898_02317288
CI01000027_02240021_02241453.mRNA mRNA downstream 181452 2239996 ~ 2241453 (-) True CI01000027_02240021_02241453
CI01000027_02226447_02227499.mRNA mRNA downstream 195406 2225781 ~ 2227499 (-) False CI01000027_02226447_02227499
CI01000027_02147653_02152768.mRNA mRNA downstream 269419 2147557 ~ 2153486 (-) True CI01000027_02147653_02152768
CI01000027_02119227_02124423.mRNA mRNA downstream 298149 2119131 ~ 2124756 (-) False CI01000027_02119227_02124423
CI01000027_02460101_02470648.mRNA mRNA upstream 36497 2459697 ~ 2470805 (-) False CI01000027_02460101_02470648
CI01000027_02742168_02773304.mRNA mRNA upstream 318968 2742168 ~ 2773304 (-) True CI01000027_02742168_02773304
CI01000027_02840202_02843749.mRNA mRNA upstream 416282 2839482 ~ 2845691 (-) True CI01000027_02840202_02843749
CI01000027_02950348_02954214.mRNA mRNA upstream 526906 2950106 ~ 2954214 (-) True CI01000027_02950348_02954214
CI01000027_02961909_02972343.mRNA mRNA upstream 538564 2961764 ~ 2972343 (-) True CI01000027_02961909_02972343
TU158517 other downstream 194880 2227919 ~ 2228025 (-) True G139484
TU158538 other downstream 296877 2125857 ~ 2126028 (-) True G139505
TU158463 other downstream 1102744 1302034 ~ 1320161 (-) True CI01000027_01303308_01319462
TU158436 other downstream 1175928 1246564 ~ 1246977 (-) True G139420
TU158434 other downstream 1176221 1246564 ~ 1246684 (-) False G139420
TU159241 other upstream 1078334 3510282 ~ 3584679 (-) False G140118
TU159249 other upstream 1078334 3512060 ~ 3584679 (-) True G140118
TU159244 other upstream 1086152 3509352 ~ 3584679 (-) True G140118
TU159398 other upstream 1364178 3787378 ~ 3789222 (-) True CI01000027_03787377_03788902
TU159388 other upstream 1499196 3922396 ~ 3925572 (-) True CI01000027_03922380_03931033

Expression Profile