RNA id: TU157665


Basic Information

Item Value
RNA id TU157665
length 230
lncRNA type intronic
GC content 0.33
exon number 1
gene id G138763
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 2612593 ~ 2612822 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTATTTTGGCCTTCAAAACAGCCTTTCACTACCACTATAAAGCTTGGTTGTGTTAGTCTGAAAGAAGATACTCATATACACCTAGGATGGTTTAAGGGTGAGTAAATCGTGGGATAATTTTCATTTTTGGGTGAACTATCTCTTTAAGAACCACATAGACATACAGTACAGTACTGTTGAAAAGTCAGTTTTTAAGAAATTAATACTTTTATTCAGCAAAAACACACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157664 lncRNA upstream 403 2611906 ~ 2612190 (+) True G138762
TU157663 lncRNA upstream 3133 2609167 ~ 2609460 (+) True G138761
TU157662 lncRNA upstream 3944 2608426 ~ 2608649 (+) True G138760
TU157661 lncRNA upstream 4954 2607409 ~ 2607639 (+) True G138759
TU157660 lncRNA upstream 5881 2606512 ~ 2606712 (+) True G138758
TU157666 lncRNA downstream 251 2613073 ~ 2613529 (+) True G138764
TU157667 lncRNA downstream 1673 2614495 ~ 2614729 (+) True G138765
TU157668 lncRNA downstream 3181 2616003 ~ 2616299 (+) True G138766
TU157669 lncRNA downstream 4712 2617534 ~ 2617779 (+) True G138767
TU157670 lncRNA downstream 5362 2618184 ~ 2618438 (+) True G138768
CI01000027_02530086_02589227.mRNA mRNA upstream 23117 2529638 ~ 2589476 (+) False CI01000027_02530086_02589227
CI01000027_02492454_02508459.mRNA mRNA upstream 103991 2492077 ~ 2508602 (+) True CI01000027_02492454_02508459
CI01000027_02455787_02458435.mRNA mRNA upstream 153549 2455153 ~ 2459044 (+) True CI01000027_02455787_02458435
CI01000027_02429134_02451902.mRNA mRNA upstream 160058 2429006 ~ 2452535 (+) False CI01000027_02429134_02451902
CI01000027_02419674_02422700.mRNA mRNA upstream 189465 2419633 ~ 2423128 (+) True CI01000027_02419674_02422700
CI01000027_02895512_02924151.mRNA mRNA downstream 282690 2895512 ~ 2924197 (+) True CI01000027_02895512_02924151
CI01000027_02941870_02946290.mRNA mRNA downstream 329048 2941870 ~ 2947897 (+) False CI01000027_02941870_02946290
CI01000027_02981155_02982628.mRNA mRNA downstream 368189 2981011 ~ 2982885 (+) True CI01000027_02981155_02982628
CI01000027_02991231_02994560.mRNA mRNA downstream 378409 2991231 ~ 2994717 (+) True CI01000027_02991231_02994560
CI01000027_02995394_03005981.mRNA mRNA downstream 382572 2995394 ~ 3005997 (+) True CI01000027_02995394_03005981
TU157376 other upstream 935733 1664408 ~ 1676860 (+) False G138515
TU157281 other upstream 1104777 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 1613412 995970 ~ 999181 (+) True G138290
TU157065 other upstream 1743018 855388 ~ 869575 (+) False G138247
TU157051 other upstream 1780910 829774 ~ 831683 (+) True G138238
TU157841 other downstream 871565 3484387 ~ 3486647 (+) True G138915
TU157886 other downstream 889250 3502072 ~ 3520065 (+) True G138953
TU159628 other downstream 2124576 4737398 ~ 4774262 (+) False G140436
TU159629 other downstream 2124576 4737398 ~ 4774262 (+) False G140436
TU159630 other downstream 2124576 4737398 ~ 4774262 (+) True G140436

Expression Profile