RNA id: TU157667


Basic Information

Item Value
RNA id TU157667
length 235
lncRNA type intronic
GC content 0.39
exon number 1
gene id G138765
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 2614495 ~ 2614729 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAATATTAAAGTACCACGGTCTCAGTACTATTTTGTAAGACTTGCACCAAAGATCTCACATTCTCAAGGGAGTGTTTGAGTATGTACTTGTATCAAAGCCATTCGATGGCCTTTTTTGTCTCAAGCACCACCAAGTTTCAGCAAATCTCCTCTAAGATTCTTTTGAACCTTTTGATGGCTTTGCTAAAACGAAGACCAACAGTGGTCCAAACTTTCAACTCTTTTACTTCCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157666 lncRNA upstream 966 2613073 ~ 2613529 (+) True G138764
TU157665 lncRNA upstream 1673 2612593 ~ 2612822 (+) True G138763
TU157664 lncRNA upstream 2305 2611906 ~ 2612190 (+) True G138762
TU157663 lncRNA upstream 5035 2609167 ~ 2609460 (+) True G138761
TU157662 lncRNA upstream 5846 2608426 ~ 2608649 (+) True G138760
TU157668 lncRNA downstream 1274 2616003 ~ 2616299 (+) True G138766
TU157669 lncRNA downstream 2805 2617534 ~ 2617779 (+) True G138767
TU157670 lncRNA downstream 3455 2618184 ~ 2618438 (+) True G138768
TU157672 lncRNA downstream 4789 2619518 ~ 2619726 (+) True G138770
TU157673 lncRNA downstream 6641 2621370 ~ 2621593 (+) True G138771
CI01000027_02530086_02589227.mRNA mRNA upstream 25019 2529638 ~ 2589476 (+) False CI01000027_02530086_02589227
CI01000027_02492454_02508459.mRNA mRNA upstream 105893 2492077 ~ 2508602 (+) True CI01000027_02492454_02508459
CI01000027_02455787_02458435.mRNA mRNA upstream 155451 2455153 ~ 2459044 (+) True CI01000027_02455787_02458435
CI01000027_02429134_02451902.mRNA mRNA upstream 161960 2429006 ~ 2452535 (+) False CI01000027_02429134_02451902
CI01000027_02419674_02422700.mRNA mRNA upstream 191367 2419633 ~ 2423128 (+) True CI01000027_02419674_02422700
CI01000027_02895512_02924151.mRNA mRNA downstream 280783 2895512 ~ 2924197 (+) True CI01000027_02895512_02924151
CI01000027_02941870_02946290.mRNA mRNA downstream 327141 2941870 ~ 2947897 (+) False CI01000027_02941870_02946290
CI01000027_02981155_02982628.mRNA mRNA downstream 366282 2981011 ~ 2982885 (+) True CI01000027_02981155_02982628
CI01000027_02991231_02994560.mRNA mRNA downstream 376502 2991231 ~ 2994717 (+) True CI01000027_02991231_02994560
CI01000027_02995394_03005981.mRNA mRNA downstream 380665 2995394 ~ 3005997 (+) True CI01000027_02995394_03005981
TU157376 other upstream 937635 1664408 ~ 1676860 (+) False G138515
TU157281 other upstream 1106679 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 1615314 995970 ~ 999181 (+) True G138290
TU157065 other upstream 1744920 855388 ~ 869575 (+) False G138247
TU157051 other upstream 1782812 829774 ~ 831683 (+) True G138238
TU157841 other downstream 869658 3484387 ~ 3486647 (+) True G138915
TU157886 other downstream 887343 3502072 ~ 3520065 (+) True G138953
TU159628 other downstream 2122669 4737398 ~ 4774262 (+) False G140436
TU159629 other downstream 2122669 4737398 ~ 4774262 (+) False G140436
TU159630 other downstream 2122669 4737398 ~ 4774262 (+) True G140436

Expression Profile