RNA id: TU158871


Basic Information

Item Value
RNA id TU158871
length 286
lncRNA type intronic
GC content 0.41
exon number 1
gene id G139797
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 2681747 ~ 2682032 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTTACCTTCTTGAGAAGTGGTCTGCTATAAAGTTTCTAAGCAATTGGTCAAGAAAAAAATCTGTTGACTTACATTGAAGGACTCAAGCCATATATAGAGACCACCCACAACACCCTAACAACTACCCGGCAACACCCTGACAACCATCCAGAACACCCTAGCAAACCATGCAGCAATGATCTGGCAAAAACCCAAAAAACCCTTTAAACAGAGTGACATATTCTACTCTGAAAATCCAGTTCAACAGTAAAACTGTGCTAACTTGCTATTAGCCACTACCACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158870 lncRNA downstream 4977 2676553 ~ 2676770 (-) True G139796
TU158869 lncRNA downstream 6915 2674588 ~ 2674832 (-) True G139795
TU158858 lncRNA downstream 41704 2639291 ~ 2640043 (-) True G139784
TU158852 lncRNA downstream 53405 2628083 ~ 2628342 (-) True G139778
TU158846 lncRNA downstream 58768 2622523 ~ 2622979 (-) False G139777
TU158872 lncRNA upstream 238 2682270 ~ 2682692 (-) True G139798
TU158879 lncRNA upstream 12183 2694215 ~ 2694424 (-) True G139805
TU158880 lncRNA upstream 12880 2694912 ~ 2695186 (-) True G139806
TU158881 lncRNA upstream 13194 2695226 ~ 2695437 (-) True G139807
TU158914 lncRNA upstream 51613 2733645 ~ 2734317 (-) True G139839
CI01000027_02460101_02470648.mRNA mRNA downstream 210942 2459697 ~ 2470805 (-) False CI01000027_02460101_02470648
CI01000027_02314898_02317288.mRNA mRNA downstream 364439 2314551 ~ 2317308 (-) True CI01000027_02314898_02317288
CI01000027_02240021_02241453.mRNA mRNA downstream 440294 2239996 ~ 2241453 (-) True CI01000027_02240021_02241453
CI01000027_02226447_02227499.mRNA mRNA downstream 454248 2225781 ~ 2227499 (-) False CI01000027_02226447_02227499
CI01000027_02147653_02152768.mRNA mRNA downstream 528261 2147557 ~ 2153486 (-) True CI01000027_02147653_02152768
CI01000027_02742168_02773304.mRNA mRNA upstream 60136 2742168 ~ 2773304 (-) True CI01000027_02742168_02773304
CI01000027_02840202_02843749.mRNA mRNA upstream 157450 2839482 ~ 2845691 (-) True CI01000027_02840202_02843749
CI01000027_02950348_02954214.mRNA mRNA upstream 268074 2950106 ~ 2954214 (-) True CI01000027_02950348_02954214
CI01000027_02961909_02972343.mRNA mRNA upstream 279732 2961764 ~ 2972343 (-) True CI01000027_02961909_02972343
CI01000027_02984235_02987159.mRNA mRNA upstream 301975 2984007 ~ 2987159 (-) True CI01000027_02984235_02987159
TU158517 other downstream 453722 2227919 ~ 2228025 (-) True G139484
TU158538 other downstream 555719 2125857 ~ 2126028 (-) True G139505
TU158463 other downstream 1361586 1302034 ~ 1320161 (-) True CI01000027_01303308_01319462
TU158436 other downstream 1434770 1246564 ~ 1246977 (-) True G139420
TU158434 other downstream 1435063 1246564 ~ 1246684 (-) False G139420
TU159241 other upstream 819502 3510282 ~ 3584679 (-) False G140118
TU159249 other upstream 819502 3512060 ~ 3584679 (-) True G140118
TU159244 other upstream 827320 3509352 ~ 3584679 (-) True G140118
TU159398 other upstream 1105346 3787378 ~ 3789222 (-) True CI01000027_03787377_03788902
TU159388 other upstream 1240364 3922396 ~ 3925572 (-) True CI01000027_03922380_03931033

Expression Profile