RNA id: TU158872


Basic Information

Item Value
RNA id TU158872
length 423
lncRNA type intronic
GC content 0.40
exon number 1
gene id G139798
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 2682270 ~ 2682692 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGACCTCGCAGTTGAATCGTTCTCTCTCGCTAATAAATACGAAGGCAGAGAAGAAATTATAGAGACTTAACACAACACTCCAGAAATCCTGTTATTAGCCTTTTTGTTTCCCATATTCAGTCTCCTGGCAAAAAGATTAGACGATTTTAAAAGAACTGCATAATCTTCTTTAACAGCTTATCAAAACTTTAATGATTTGCTGATAAAGCGCACAAATGAAGGCGCTGGTAAAGAGGATCAGCCCCCCAGTGCAGTGCAGTGATTAGAAGATGAGAGCTGGGAAACGAAAAATCCCACGTCTGCCTCGTGTTCACTTTGAAGGGGAAGAAACTCTGTTTCAGCGCAGAGGAGAGTCATAATCATCCAAAAAACATTCGGCTAAATGAGAGCTCTTACTCTGGAATCCTTGTACTTTGCTTATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158871 lncRNA downstream 238 2681747 ~ 2682032 (-) True G139797
TU158870 lncRNA downstream 5500 2676553 ~ 2676770 (-) True G139796
TU158869 lncRNA downstream 7438 2674588 ~ 2674832 (-) True G139795
TU158858 lncRNA downstream 42227 2639291 ~ 2640043 (-) True G139784
TU158852 lncRNA downstream 53928 2628083 ~ 2628342 (-) True G139778
TU158879 lncRNA upstream 11523 2694215 ~ 2694424 (-) True G139805
TU158880 lncRNA upstream 12220 2694912 ~ 2695186 (-) True G139806
TU158881 lncRNA upstream 12534 2695226 ~ 2695437 (-) True G139807
TU158914 lncRNA upstream 50953 2733645 ~ 2734317 (-) True G139839
TU158812 lncRNA upstream 54656 2737348 ~ 2738071 (-) True G139743
CI01000027_02460101_02470648.mRNA mRNA downstream 211465 2459697 ~ 2470805 (-) False CI01000027_02460101_02470648
CI01000027_02314898_02317288.mRNA mRNA downstream 364962 2314551 ~ 2317308 (-) True CI01000027_02314898_02317288
CI01000027_02240021_02241453.mRNA mRNA downstream 440817 2239996 ~ 2241453 (-) True CI01000027_02240021_02241453
CI01000027_02226447_02227499.mRNA mRNA downstream 454771 2225781 ~ 2227499 (-) False CI01000027_02226447_02227499
CI01000027_02147653_02152768.mRNA mRNA downstream 528784 2147557 ~ 2153486 (-) True CI01000027_02147653_02152768
CI01000027_02742168_02773304.mRNA mRNA upstream 59476 2742168 ~ 2773304 (-) True CI01000027_02742168_02773304
CI01000027_02840202_02843749.mRNA mRNA upstream 156790 2839482 ~ 2845691 (-) True CI01000027_02840202_02843749
CI01000027_02950348_02954214.mRNA mRNA upstream 267414 2950106 ~ 2954214 (-) True CI01000027_02950348_02954214
CI01000027_02961909_02972343.mRNA mRNA upstream 279072 2961764 ~ 2972343 (-) True CI01000027_02961909_02972343
CI01000027_02984235_02987159.mRNA mRNA upstream 301315 2984007 ~ 2987159 (-) True CI01000027_02984235_02987159
TU158517 other downstream 454245 2227919 ~ 2228025 (-) True G139484
TU158538 other downstream 556242 2125857 ~ 2126028 (-) True G139505
TU158463 other downstream 1362109 1302034 ~ 1320161 (-) True CI01000027_01303308_01319462
TU158436 other downstream 1435293 1246564 ~ 1246977 (-) True G139420
TU158434 other downstream 1435586 1246564 ~ 1246684 (-) False G139420
TU159241 other upstream 818842 3510282 ~ 3584679 (-) False G140118
TU159249 other upstream 818842 3512060 ~ 3584679 (-) True G140118
TU159244 other upstream 826660 3509352 ~ 3584679 (-) True G140118
TU159398 other upstream 1104686 3787378 ~ 3789222 (-) True CI01000027_03787377_03788902
TU159388 other upstream 1239704 3922396 ~ 3925572 (-) True CI01000027_03922380_03931033

Expression Profile