RNA id: TU159023


Basic Information

Item Value
RNA id TU159023
length 1893
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id G139939
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3112268 ~ 3114186 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCATGTTTAATTCTGTATTTAATGTCCAGTGATCAATACAAATTAATTGGAATATTGTAATGTAAACAAGAGATTGCTCAAATTAATTCTGATTTTCATTACACTGGAAATAGAAGGTCTGACACATTGCATTGTGGGATACAGTATGTCATGCAGGGTTATTTCTGTGCTTACAGAAAATGAGCATGCTTACATTACAGAAACTACATTTTTGCAGACTGCATGAGATCTTACGTGCCCATAGTTTAAGCAACATGACTAACAATATTCTGGATCTGACTGAATAAAGAAATCAAGACAATGAGATTTTAAATAATTCATTTACACAGTGCAATTGTTTAAAAACTGTTGATAGTCACTATTTAGGCATAGGGTCAGGAAATATACTAATTAAAAATCAATTATTTAAGAGTCATCAGTTAATATGGCCTTTACACAATACATACTTACAGCTTCAGGTTTTTTTTGGCACCATTCACACAGAAATTCCTGAAACACAACTAAGACTTTTCAAACAACCAAAAAGTTGACAAGACTGAACAGGTCGAATAAAATCAATCACAATGATTCAAGAAAAGATTCTTCACAGGAGATAGACATATTTATATGGTAGGGTTTATGTTTCATTACCTCCTTAAATAAATATCAAAATGCAAGTCTTAAATTATATTTGATTTTCAACATTTTGATCTAAGAGGAAGATATTCCTTTTAAATATTTACTATAGACAAAGTAAAAAAATGTATTTATTTCACAGCAAGTCTACAAACTAGATTTTGGGGCGTCCAAACAGTCCTGGAGGGCCACTGTCCTGCAGAGTTTAGCTCCAGCTTACCTCAACACACCTGACTGGAAGTTTCTAGTATGCCTAATAAGACCTTGATTAGCTGGTTCAGGTGTGTTTAACTGGGATTGGAGATGAACTCTGCAGGAGCAGGATTGGACAGCCCTGCTTTAGACAGGCAGCAAGGACTAATACAAGATGGGAAAAATGTGCAGTGATCTATGGTAAATTATCCATATTCTAAAAGCCTGTGATCAAGTGTTGTTCTTAGCCAGTGGTTTGCAGAGTGAGATCACACGCTGGGCTGCAGTCGGGTCACGCTCTGTTTCTGCTGGTTATATCTGCGGAAGAAAGCTTTTCCGAACTCATATGTGCTGATCATAATAGCACATGCCGGAGCCACTTTAATCAGCCTTGGCATAAAACCTGAGGATGAGAAAAAGAGTGTACCACTGAGACATCTAGTGTTGATTTGAAAATCAAGGTACCAAAAACAACTGAAAACAATTCAGAATCGTATAGTTAAACTAAAACACACACACTATATAAAATGTAATATAGTGTAATATAGTAATATAAAAAGTACTGTGCAAAAGTCTTAGGCCACCACCATCTTTGTTGTTTTTTAGCAATGTTTTAATGACCGTCCATTTTATTTTTTGGTCTTTATTACGATACAAACTGAAAACAGTAAATATGTACACAAAATGGCTTCTTTAAGTAAAAATCAGTATTTAGTGTGACCTCCTGGACTTCTTCCATTTCGAAAAGAACATATAAGAAACTTCTCATCATATTTTGAAAGTTTTCTTGGCCTTCCAGTCCTTTTCCATTTCATTTAGGTTTAAGAGAGCCAGGTTCCTGCTATTGCCTATAGAAGTCTTTTTTTTTCTGTTTTATAATACTGCATACAAATTTCCTGTATTTTCTGGTTATATTCTAAAAAAGAGACTGAAAAATAATTATATATGGTCATTATACCATTGCTAAAACAACATCTAATGGTGGCCTAAGACTTTTGCACAGTACTGTATATATTAAAAAAAAAAAAATCTTAGTGACCTCAAATGTTTAAACGCTAGTGTATATATATATATACACACACACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158963 lncRNA downstream 164352 2947331 ~ 2947916 (-) True G139883
TU159010 lncRNA downstream 182502 2929308 ~ 2929766 (-) True G139929
TU158922 lncRNA downstream 256668 2788349 ~ 2855600 (-) True G139845
TU158812 lncRNA downstream 374197 2737348 ~ 2738071 (-) True G139743
TU158914 lncRNA downstream 377951 2733645 ~ 2734317 (-) True G139839
TU159029 lncRNA upstream 2188 3116374 ~ 3116612 (-) True CI01000027_03117518_03132307
TU159063 lncRNA upstream 23621 3137807 ~ 3138013 (-) True G139972
TU159053 lncRNA upstream 44209 3158395 ~ 3159374 (-) False G139967
TU159054 lncRNA upstream 44209 3158395 ~ 3159374 (-) True G139967
TU159072 lncRNA upstream 45864 3160050 ~ 3160407 (-) True G139980
CI01000027_03101390_03106479.mRNA mRNA downstream 5789 3101089 ~ 3106479 (-) True CI01000027_03101390_03106479
CI01000027_03035114_03099542.mRNA mRNA downstream 12726 3035114 ~ 3099542 (-) True CI01000027_03035114_03099542
CI01000027_02989304_02990854.mRNA mRNA downstream 121414 2989289 ~ 2990854 (-) True CI01000027_02989304_02990854
CI01000027_02984235_02987159.mRNA mRNA downstream 125109 2984007 ~ 2987159 (-) True CI01000027_02984235_02987159
CI01000027_02961909_02972343.mRNA mRNA downstream 139925 2961764 ~ 2972343 (-) True CI01000027_02961909_02972343
CI01000027_03117518_03132307.mRNA mRNA upstream 1447 3115633 ~ 3132307 (-) False CI01000027_03117518_03132307
CI01000027_03186359_03192441.mRNA mRNA upstream 71913 3186099 ~ 3192441 (-) True CI01000027_03186359_03192441
CI01000027_03261114_03264008.mRNA mRNA upstream 146928 3261114 ~ 3264008 (-) True CI01000027_03261114_03264008
CI01000027_03297095_03298505.mRNA mRNA upstream 182846 3297032 ~ 3299512 (-) True CI01000027_03297095_03298505
CI01000027_03301041_03302954.mRNA mRNA upstream 186714 3300900 ~ 3303506 (-) True CI01000027_03301041_03302954
TU158517 other downstream 884243 2227919 ~ 2228025 (-) True G139484
TU158538 other downstream 986240 2125857 ~ 2126028 (-) True G139505
TU158463 other downstream 1792107 1302034 ~ 1320161 (-) True CI01000027_01303308_01319462
TU158436 other downstream 1865291 1246564 ~ 1246977 (-) True G139420
TU158434 other downstream 1865584 1246564 ~ 1246684 (-) False G139420
TU159241 other upstream 387348 3510282 ~ 3584679 (-) False G140118
TU159249 other upstream 387348 3512060 ~ 3584679 (-) True G140118
TU159244 other upstream 395166 3509352 ~ 3584679 (-) True G140118
TU159398 other upstream 673192 3787378 ~ 3789222 (-) True CI01000027_03787377_03788902
TU159388 other upstream 808210 3922396 ~ 3925572 (-) True CI01000027_03922380_03931033

Expression Profile