RNA id: TU157742


Basic Information

Item Value
RNA id TU157742
length 553
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id G138836
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3129459 ~ 3136867 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCATGTTCTCGATGCTGTGAATGCAGCTGTGTGGGACTTTAATACATGCCACGTGTATGTAATCCCAGAAACTGCGCGGGCTCTCGTAACCAAACCAGCTGACCTGACCTTTCAGTCTATGGCTCAGAATATGCTCCAGAATGGAGACAAAGTTGATGAACTCAGCAGATGTGTCGTCTATCGTCTCAAAACATGAGCGATCAATGAGGGTTTTCACTGAGAACCTGCACACGGTGATCAGATTCCTCCTCTCTACGGCTCTGATCCGCGCTGCCGCTTTTTTACGAGCCCCGTTAAACCCGAGATTTATCGATGCCATGGTCGTCTCTTTCTGATGCACAGCTGTTTATTTCCTCACGTCTTTTTCTCCTCTGATGCTTTGGATCAGTCTCCAGCTGACTGACTCTCACTGGAGCCATAGAAATTGAACAAGCGGATGGAATGGCAATTAGCGTGAAATGGGTTTCAAAGATGGGCGTGGTTTAGTGGGTTTAAAAAATAATTATCTTATTTTAACTCTTCGTTTGAGGGTTTTTTTTAGCTTTAATTAAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157741 lncRNA upstream 1517 3127355 ~ 3127942 (+) True G138835
TU157740 lncRNA upstream 2184 3127043 ~ 3127275 (+) True G138834
TU157739 lncRNA upstream 3784 3125449 ~ 3125675 (+) True G138833
TU157738 lncRNA upstream 4430 3124797 ~ 3125029 (+) True G138832
TU157737 lncRNA upstream 6293 3122874 ~ 3123166 (+) True G138831
TU157782 lncRNA downstream 54753 3191620 ~ 3191938 (+) True G138859
TU157811 lncRNA downstream 111611 3248478 ~ 3248706 (+) True G138888
TU157815 lncRNA downstream 118063 3254930 ~ 3255207 (+) True G138892
TU157807 lncRNA downstream 172963 3309830 ~ 3314832 (+) True G138884
TU157827 lncRNA downstream 182416 3319283 ~ 3320531 (+) True G138904
CI01000027_03110196_03113083.mRNA mRNA upstream 16050 3109207 ~ 3113409 (+) True CI01000027_03110196_03113083
CI01000027_03014464_03027710.mRNA mRNA upstream 101597 3013856 ~ 3027862 (+) True CI01000027_03014464_03027710
CI01000027_03008262_03011156.mRNA mRNA upstream 117464 3008262 ~ 3011995 (+) True CI01000027_03008262_03011156
CI01000027_02995394_03005981.mRNA mRNA upstream 123462 2995394 ~ 3005997 (+) True CI01000027_02995394_03005981
CI01000027_02991231_02994560.mRNA mRNA upstream 134742 2991231 ~ 2994717 (+) True CI01000027_02991231_02994560
CI01000027_03142352_03156415.mRNA mRNA downstream 5243 3142110 ~ 3157077 (+) True CI01000027_03142352_03156415
CI01000027_03159177_03163102.mRNA mRNA downstream 22102 3158969 ~ 3163325 (+) True CI01000027_03159177_03163102
CI01000027_03174793_03181990.mRNA mRNA downstream 37926 3174793 ~ 3182308 (+) True CI01000027_03174793_03181990
CI01000027_03202787_03208051.mRNA mRNA downstream 65920 3202787 ~ 3208301 (+) True CI01000027_03202787_03208051
CI01000027_03212432_03231800.mRNA mRNA downstream 75565 3212432 ~ 3231862 (+) True CI01000027_03212432_03231800
TU157376 other upstream 1452599 1664408 ~ 1676860 (+) False G138515
TU157281 other upstream 1621643 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 2130278 995970 ~ 999181 (+) True G138290
TU157065 other upstream 2259884 855388 ~ 869575 (+) False G138247
TU157051 other upstream 2297776 829774 ~ 831683 (+) True G138238
TU157841 other downstream 347520 3484387 ~ 3486647 (+) True G138915
TU157886 other downstream 365205 3502072 ~ 3520065 (+) True G138953
TU159628 other downstream 1600531 4737398 ~ 4774262 (+) False G140436
TU159629 other downstream 1600531 4737398 ~ 4774262 (+) False G140436
TU159630 other downstream 1600531 4737398 ~ 4774262 (+) True G140436

Expression Profile