RNA id: TU159063


Basic Information

Item Value
RNA id TU159063
length 207
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G139972
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3137807 ~ 3138013 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTGAGGCACTGCATATGAGATGTCTTCCTCCTCTAAGACACCCGATTCAACTCATCATCTCATTATTAGAGGCTCCATGACCTGAATTGTGTGTAAGATTAGTGAGACTCTGAAAATGTGCAGGCTAATGGGCCTCCGGGAGCTGGATTGAGAAACTCTAATCTACCACCATTTCAGCTGAAATGCACAAAACCTTAGAACCACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159029 lncRNA downstream 21195 3116374 ~ 3116612 (-) True CI01000027_03117518_03132307
TU159023 lncRNA downstream 23621 3112268 ~ 3114186 (-) True G139939
TU158963 lncRNA downstream 189891 2947331 ~ 2947916 (-) True G139883
TU159010 lncRNA downstream 208041 2929308 ~ 2929766 (-) True G139929
TU158922 lncRNA downstream 282207 2788349 ~ 2855600 (-) True G139845
TU159053 lncRNA upstream 20382 3158395 ~ 3159374 (-) False G139967
TU159054 lncRNA upstream 20382 3158395 ~ 3159374 (-) True G139967
TU159072 lncRNA upstream 22037 3160050 ~ 3160407 (-) True G139980
TU159097 lncRNA upstream 58457 3196470 ~ 3196703 (-) True G139998
TU159110 lncRNA upstream 91300 3229313 ~ 3230347 (-) False G140011
CI01000027_03117518_03132307.mRNA mRNA downstream 5500 3115633 ~ 3132307 (-) False CI01000027_03117518_03132307
CI01000027_03101390_03106479.mRNA mRNA downstream 31328 3101089 ~ 3106479 (-) True CI01000027_03101390_03106479
CI01000027_03035114_03099542.mRNA mRNA downstream 38265 3035114 ~ 3099542 (-) True CI01000027_03035114_03099542
CI01000027_02989304_02990854.mRNA mRNA downstream 146953 2989289 ~ 2990854 (-) True CI01000027_02989304_02990854
CI01000027_02984235_02987159.mRNA mRNA downstream 150648 2984007 ~ 2987159 (-) True CI01000027_02984235_02987159
CI01000027_03186359_03192441.mRNA mRNA upstream 48086 3186099 ~ 3192441 (-) True CI01000027_03186359_03192441
CI01000027_03261114_03264008.mRNA mRNA upstream 123101 3261114 ~ 3264008 (-) True CI01000027_03261114_03264008
CI01000027_03297095_03298505.mRNA mRNA upstream 159019 3297032 ~ 3299512 (-) True CI01000027_03297095_03298505
CI01000027_03301041_03302954.mRNA mRNA upstream 162887 3300900 ~ 3303506 (-) True CI01000027_03301041_03302954
CI01000027_03371533_03388330.mRNA mRNA upstream 233236 3371249 ~ 3389135 (-) True CI01000027_03371533_03388330
TU158517 other downstream 909782 2227919 ~ 2228025 (-) True G139484
TU158538 other downstream 1011779 2125857 ~ 2126028 (-) True G139505
TU158463 other downstream 1817646 1302034 ~ 1320161 (-) True CI01000027_01303308_01319462
TU158436 other downstream 1890830 1246564 ~ 1246977 (-) True G139420
TU158434 other downstream 1891123 1246564 ~ 1246684 (-) False G139420
TU159241 other upstream 363521 3510282 ~ 3584679 (-) False G140118
TU159249 other upstream 363521 3512060 ~ 3584679 (-) True G140118
TU159244 other upstream 371339 3509352 ~ 3584679 (-) True G140118
TU159398 other upstream 649365 3787378 ~ 3789222 (-) True CI01000027_03787377_03788902
TU159388 other upstream 784383 3922396 ~ 3925572 (-) True CI01000027_03922380_03931033

Expression Profile