RNA id: TU159072


Basic Information

Item Value
RNA id TU159072
length 245
lncRNA type intronic
GC content 0.33
exon number 2
gene id G139980
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3160050 ~ 3160407 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTGAGTTCAGTGGTTCTATCTTGATATTATAAAGCGACAAGAATACTTTTTGTGCGCCAAAAAAACAAAATAACGACTTTTCAACAATATCTATATGGGCCGATTTCAAAACACTGCTTCATGAAGCTTCTGAACTTTATGAATCTTTTGTTTTGAATTAGTGATTCGGATCTCCCATCAAACAGCTAAACTGCTTTTGGCACACAAAAAGTATTCTTGTCACTTTATAATATTAAGATAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159053 lncRNA downstream 676 3158395 ~ 3159374 (-) False G139967
TU159054 lncRNA downstream 676 3158395 ~ 3159374 (-) True G139967
TU159063 lncRNA downstream 22037 3137807 ~ 3138013 (-) True G139972
TU159029 lncRNA downstream 43438 3116374 ~ 3116612 (-) True CI01000027_03117518_03132307
TU159023 lncRNA downstream 45864 3112268 ~ 3114186 (-) True G139939
TU159097 lncRNA upstream 36063 3196470 ~ 3196703 (-) True G139998
TU159110 lncRNA upstream 68906 3229313 ~ 3230347 (-) False G140011
TU159111 lncRNA upstream 68906 3229313 ~ 3231412 (-) True G140011
TU159128 lncRNA upstream 92702 3253109 ~ 3253580 (-) True G140025
TU159129 lncRNA upstream 94520 3254927 ~ 3255168 (-) True G140026
CI01000027_03117518_03132307.mRNA mRNA downstream 27743 3115633 ~ 3132307 (-) False CI01000027_03117518_03132307
CI01000027_03101390_03106479.mRNA mRNA downstream 53571 3101089 ~ 3106479 (-) True CI01000027_03101390_03106479
CI01000027_03035114_03099542.mRNA mRNA downstream 60508 3035114 ~ 3099542 (-) True CI01000027_03035114_03099542
CI01000027_02989304_02990854.mRNA mRNA downstream 169196 2989289 ~ 2990854 (-) True CI01000027_02989304_02990854
CI01000027_02984235_02987159.mRNA mRNA downstream 172891 2984007 ~ 2987159 (-) True CI01000027_02984235_02987159
CI01000027_03186359_03192441.mRNA mRNA upstream 25692 3186099 ~ 3192441 (-) True CI01000027_03186359_03192441
CI01000027_03261114_03264008.mRNA mRNA upstream 100707 3261114 ~ 3264008 (-) True CI01000027_03261114_03264008
CI01000027_03297095_03298505.mRNA mRNA upstream 136625 3297032 ~ 3299512 (-) True CI01000027_03297095_03298505
CI01000027_03301041_03302954.mRNA mRNA upstream 140493 3300900 ~ 3303506 (-) True CI01000027_03301041_03302954
CI01000027_03371533_03388330.mRNA mRNA upstream 210842 3371249 ~ 3389135 (-) True CI01000027_03371533_03388330
TU158517 other downstream 932025 2227919 ~ 2228025 (-) True G139484
TU158538 other downstream 1034022 2125857 ~ 2126028 (-) True G139505
TU158463 other downstream 1839889 1302034 ~ 1320161 (-) True CI01000027_01303308_01319462
TU158436 other downstream 1913073 1246564 ~ 1246977 (-) True G139420
TU158434 other downstream 1913366 1246564 ~ 1246684 (-) False G139420
TU159241 other upstream 341127 3510282 ~ 3584679 (-) False G140118
TU159249 other upstream 341127 3512060 ~ 3584679 (-) True G140118
TU159244 other upstream 348945 3509352 ~ 3584679 (-) True G140118
TU159398 other upstream 626971 3787378 ~ 3789222 (-) True CI01000027_03787377_03788902
TU159388 other upstream 761989 3922396 ~ 3925572 (-) True CI01000027_03922380_03931033

Expression Profile