RNA id: TU157811


Basic Information

Item Value
RNA id TU157811
length 229
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G138888
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3248478 ~ 3248706 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGAACCAAAACCATTTAGTTACCAACATTCTTCAAAATATCTTTTGTGTTCCACAGAAAAAGAAATGCATACAAGTTTGGAATGACATGAGGGTCAATAAATGATTAAAAACACATTTCACCTTTAAAGGCACAGTATGAAAGTCGCTTATTCAAAACAATAACAAAGGCAGATTGATGATGCCGTGAATCAGCATGGAATCATGGGAGCTGTCGTCTTCACCTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157782 lncRNA upstream 56540 3191620 ~ 3191938 (+) True G138859
TU157742 lncRNA upstream 111611 3129459 ~ 3136867 (+) True G138836
TU157741 lncRNA upstream 120536 3127355 ~ 3127942 (+) True G138835
TU157740 lncRNA upstream 121203 3127043 ~ 3127275 (+) True G138834
TU157739 lncRNA upstream 122803 3125449 ~ 3125675 (+) True G138833
TU157815 lncRNA downstream 6224 3254930 ~ 3255207 (+) True G138892
TU157807 lncRNA downstream 61124 3309830 ~ 3314832 (+) True G138884
TU157827 lncRNA downstream 70577 3319283 ~ 3320531 (+) True G138904
TU157858 lncRNA downstream 168978 3417684 ~ 3417948 (+) True G138925
TU157859 lncRNA downstream 169717 3418423 ~ 3418690 (+) True G138926
CI01000027_03243374_03247133.mRNA mRNA upstream 1308 3243154 ~ 3247170 (+) True CI01000027_03243374_03247133
CI01000027_03233523_03240000.mRNA mRNA upstream 8476 3233523 ~ 3240002 (+) True CI01000027_03233523_03240000
CI01000027_03212432_03231800.mRNA mRNA upstream 16616 3212432 ~ 3231862 (+) True CI01000027_03212432_03231800
CI01000027_03202787_03208051.mRNA mRNA upstream 40177 3202787 ~ 3208301 (+) True CI01000027_03202787_03208051
CI01000027_03174793_03181990.mRNA mRNA upstream 66170 3174793 ~ 3182308 (+) True CI01000027_03174793_03181990
CI01000027_03278134_03279807.mRNA mRNA downstream 29428 3278134 ~ 3281022 (+) True CI01000027_03278134_03279807
CI01000027_03335011_03357910.mRNA mRNA downstream 86305 3335011 ~ 3358277 (+) True CI01000027_03335011_03357910
CI01000027_03421902_03436988.mRNA mRNA downstream 173122 3421828 ~ 3437216 (+) True CI01000027_03421902_03436988
CI01000027_03470743_03477848.mRNA mRNA downstream 221914 3470620 ~ 3479641 (+) True CI01000027_03470743_03477848
CI01000027_03524553_03546701.mRNA mRNA downstream 274901 3523607 ~ 3546701 (+) True CI01000027_03524553_03546701
TU157376 other upstream 1571618 1664408 ~ 1676860 (+) False G138515
TU157281 other upstream 1740662 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 2249297 995970 ~ 999181 (+) True G138290
TU157065 other upstream 2378903 855388 ~ 869575 (+) False G138247
TU157051 other upstream 2416795 829774 ~ 831683 (+) True G138238
TU157841 other downstream 235681 3484387 ~ 3486647 (+) True G138915
TU157886 other downstream 253366 3502072 ~ 3520065 (+) True G138953
TU159628 other downstream 1488692 4737398 ~ 4774262 (+) False G140436
TU159629 other downstream 1488692 4737398 ~ 4774262 (+) False G140436
TU159630 other downstream 1488692 4737398 ~ 4774262 (+) True G140436

Expression Profile