RNA id: TU159146


Basic Information

Item Value
RNA id TU159146
length 589
lncRNA type antisense_over
GC content 0.48
exon number 4
gene id G140035
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3351440 ~ 3352713 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGACGCCCACCAAGTAATCAACCAAGACCATAATCATGATGGTTAGAAAAACTGCAAAGTCACTGATGGAAGAGCGGACCTTAGTGGGGAAATATCGCTTGGTCTTGAACTGCTTGAGGAAGGATGACAGGAAGAAAGTGGTGAAGAAGAGAATGACAGACCAGAACAATACATCAGGGATGTACGGGCCATTATGTCCACAAGCAGGACCCACAAACTCGCCATGGAGTATCCTGCAATCTTTCACATTAAGCTCACTCCAGTCAATGGTCTCTGGAGTAAACCCTGACTGATTCCATGACTGTACCATCTCATCTGTGGTATTGGCTGGAGGTGAACACTGACATGTGTAAAATGTGAGGTTGTCCAAATTGTCATGCATGTTGAAAGGGTACATCTCCCCCAGTTGGAAGAGTTTCTCCAAGGCCTCATAGATAAAAATGATGCAGATGAGAGCAGCGAAGGCTTCCTCTGTGAATCTCGTTATATAGCACACCAGAGAGCTGGCATCTGTGGCAACCAGCACAAGGCACAAGAAGGCTGTCCAAAGGCCAATGCTAGTGCGCAGAGGGAGGTAGGACAGACCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159149 lncRNA downstream 14559 3305705 ~ 3336881 (-) True G140038
TU159062 lncRNA downstream 94927 3256124 ~ 3256513 (-) True G139971
TU159129 lncRNA downstream 96272 3254927 ~ 3255168 (-) True G140026
TU159128 lncRNA downstream 97860 3253109 ~ 3253580 (-) True G140025
TU159111 lncRNA downstream 120028 3229313 ~ 3231412 (-) True G140011
TU159195 lncRNA upstream 40141 3392854 ~ 3393199 (-) True G140078
TU159196 lncRNA upstream 40597 3393310 ~ 3393641 (-) True G140079
TU159221 lncRNA upstream 65045 3417758 ~ 3418059 (-) True G140101
TU159225 lncRNA upstream 78919 3431632 ~ 3431954 (-) True G140105
TU159255 lncRNA upstream 185536 3538249 ~ 3538545 (-) True G140124
CI01000027_03301041_03302954.mRNA mRNA downstream 47934 3300900 ~ 3303506 (-) True CI01000027_03301041_03302954
CI01000027_03297095_03298505.mRNA mRNA downstream 51928 3297032 ~ 3299512 (-) True CI01000027_03297095_03298505
CI01000027_03261114_03264008.mRNA mRNA downstream 87432 3261114 ~ 3264008 (-) True CI01000027_03261114_03264008
CI01000027_03186359_03192441.mRNA mRNA downstream 158999 3186099 ~ 3192441 (-) True CI01000027_03186359_03192441
CI01000027_03117518_03132307.mRNA mRNA downstream 219133 3115633 ~ 3132307 (-) False CI01000027_03117518_03132307
CI01000027_03371533_03388330.mRNA mRNA upstream 18536 3371249 ~ 3389135 (-) True CI01000027_03371533_03388330
CI01000027_03468269_03469904.mRNA mRNA upstream 115151 3467864 ~ 3470215 (-) True CI01000027_03468269_03469904
CI01000027_03484797_03490716.mRNA mRNA upstream 132029 3484742 ~ 3490953 (-) True CI01000027_03484797_03490716
CI01000027_03492624_03493292.mRNA mRNA upstream 139787 3492500 ~ 3493292 (-) True CI01000027_03492624_03493292
CI01000027_03501726_03510058.mRNA mRNA upstream 148407 3501120 ~ 3510058 (-) False CI01000027_03501726_03510058
TU158517 other downstream 1123415 2227919 ~ 2228025 (-) True G139484
TU158538 other downstream 1225412 2125857 ~ 2126028 (-) True G139505
TU158463 other downstream 2031279 1302034 ~ 1320161 (-) True CI01000027_01303308_01319462
TU158436 other downstream 2104463 1246564 ~ 1246977 (-) True G139420
TU158434 other downstream 2104756 1246564 ~ 1246684 (-) False G139420
TU159241 other upstream 148821 3510282 ~ 3584679 (-) False G140118
TU159249 other upstream 148821 3512060 ~ 3584679 (-) True G140118
TU159244 other upstream 156639 3509352 ~ 3584679 (-) True G140118
TU159398 other upstream 434665 3787378 ~ 3789222 (-) True CI01000027_03787377_03788902
TU159388 other upstream 569683 3922396 ~ 3925572 (-) True CI01000027_03922380_03931033

Expression Profile