RNA id: TU157858


Basic Information

Item Value
RNA id TU157858
length 265
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G138925
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3417684 ~ 3417948 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAACACAGAGCCATTAATGCCTAAACCGCTGGCCGCAAAAGTGAGTACACCTCTAAGTGAAAATGTCCAAATTGGGCCCAAAGTGTCAATATTTTGTGTGGCCACCATTATTTTCCAGCACTGCCTTAACCCTCTTGGGCATGGAGTTCACCAGAGCTTCACAGGTTGCTACTGGAGTCCTCTTCCACTCCTCCATGACGACATCACGGAGCTGGTGGATGTTAGAGACCTTGCGCTCCTCCACCTTCTGTTTGAGGATGCCCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157827 lncRNA upstream 97153 3319283 ~ 3320531 (+) True G138904
TU157807 lncRNA upstream 102852 3309830 ~ 3314832 (+) True G138884
TU157815 lncRNA upstream 162477 3254930 ~ 3255207 (+) True G138892
TU157811 lncRNA upstream 168978 3248478 ~ 3248706 (+) True G138888
TU157782 lncRNA upstream 225746 3191620 ~ 3191938 (+) True G138859
TU157859 lncRNA downstream 475 3418423 ~ 3418690 (+) True G138926
TU157867 lncRNA downstream 15899 3433847 ~ 3434057 (+) True G138934
TU157892 lncRNA downstream 30031 3447979 ~ 3503193 (+) True G138959
TU157839 lncRNA downstream 66439 3484387 ~ 3486647 (+) False G138915
TU157850 lncRNA downstream 74484 3492432 ~ 3497919 (+) True G138918
CI01000027_03335011_03357910.mRNA mRNA upstream 59407 3335011 ~ 3358277 (+) True CI01000027_03335011_03357910
CI01000027_03278134_03279807.mRNA mRNA upstream 136662 3278134 ~ 3281022 (+) True CI01000027_03278134_03279807
CI01000027_03243374_03247133.mRNA mRNA upstream 170514 3243154 ~ 3247170 (+) True CI01000027_03243374_03247133
CI01000027_03233523_03240000.mRNA mRNA upstream 177682 3233523 ~ 3240002 (+) True CI01000027_03233523_03240000
CI01000027_03212432_03231800.mRNA mRNA upstream 185822 3212432 ~ 3231862 (+) True CI01000027_03212432_03231800
CI01000027_03421902_03436988.mRNA mRNA downstream 3880 3421828 ~ 3437216 (+) True CI01000027_03421902_03436988
CI01000027_03470743_03477848.mRNA mRNA downstream 52672 3470620 ~ 3479641 (+) True CI01000027_03470743_03477848
CI01000027_03524553_03546701.mRNA mRNA downstream 105659 3523607 ~ 3546701 (+) True CI01000027_03524553_03546701
CI01000027_03570192_03600805.mRNA mRNA downstream 152244 3570192 ~ 3600805 (+) False CI01000027_03570192_03600805
CI01000027_03610825_03621755.mRNA mRNA downstream 192795 3610743 ~ 3621892 (+) True CI01000027_03610825_03621755
TU157376 other upstream 1740824 1664408 ~ 1676860 (+) False G138515
TU157281 other upstream 1909868 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 2418503 995970 ~ 999181 (+) True G138290
TU157065 other upstream 2548109 855388 ~ 869575 (+) False G138247
TU157051 other upstream 2586001 829774 ~ 831683 (+) True G138238
TU157841 other downstream 66439 3484387 ~ 3486647 (+) True G138915
TU157886 other downstream 84124 3502072 ~ 3520065 (+) True G138953
TU159628 other downstream 1319450 4737398 ~ 4774262 (+) False G140436
TU159629 other downstream 1319450 4737398 ~ 4774262 (+) False G140436
TU159630 other downstream 1319450 4737398 ~ 4774262 (+) True G140436

Expression Profile