RNA id: TU157867


Basic Information

Item Value
RNA id TU157867
length 211
lncRNA type intronic
GC content 0.37
exon number 1
gene id G138934
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3433847 ~ 3434057 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTATTCCACAGCTGGTCATTTAATCATGACCTGGACATGGCAGACTACCCTGATGTAGAATAAAACAGCTTCATCTTCATTTTATACACATGTACAACGTCCTGTATTTGTCAAAAGTACATTCATTCACTGCTTTATATGTGAAGTTTTTATTTACTTACACTGTGACAGTCCACGTTTTAAGCTGTCAGGCAGCAGACTGAAGTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157859 lncRNA upstream 15157 3418423 ~ 3418690 (+) True G138926
TU157858 lncRNA upstream 15899 3417684 ~ 3417948 (+) True G138925
TU157827 lncRNA upstream 113316 3319283 ~ 3320531 (+) True G138904
TU157807 lncRNA upstream 119015 3309830 ~ 3314832 (+) True G138884
TU157815 lncRNA upstream 178640 3254930 ~ 3255207 (+) True G138892
TU157892 lncRNA downstream 13922 3447979 ~ 3503193 (+) True G138959
TU157839 lncRNA downstream 50330 3484387 ~ 3486647 (+) False G138915
TU157850 lncRNA downstream 58375 3492432 ~ 3497919 (+) True G138918
TU157887 lncRNA downstream 73465 3507522 ~ 3514673 (+) True G138954
TU157893 lncRNA downstream 159545 3593602 ~ 3593743 (+) True G138960
CI01000027_03335011_03357910.mRNA mRNA upstream 75570 3335011 ~ 3358277 (+) True CI01000027_03335011_03357910
CI01000027_03278134_03279807.mRNA mRNA upstream 152825 3278134 ~ 3281022 (+) True CI01000027_03278134_03279807
CI01000027_03243374_03247133.mRNA mRNA upstream 186677 3243154 ~ 3247170 (+) True CI01000027_03243374_03247133
CI01000027_03233523_03240000.mRNA mRNA upstream 193845 3233523 ~ 3240002 (+) True CI01000027_03233523_03240000
CI01000027_03212432_03231800.mRNA mRNA upstream 201985 3212432 ~ 3231862 (+) True CI01000027_03212432_03231800
CI01000027_03470743_03477848.mRNA mRNA downstream 36563 3470620 ~ 3479641 (+) True CI01000027_03470743_03477848
CI01000027_03524553_03546701.mRNA mRNA downstream 89550 3523607 ~ 3546701 (+) True CI01000027_03524553_03546701
CI01000027_03570192_03600805.mRNA mRNA downstream 136135 3570192 ~ 3600805 (+) False CI01000027_03570192_03600805
CI01000027_03610825_03621755.mRNA mRNA downstream 176686 3610743 ~ 3621892 (+) True CI01000027_03610825_03621755
CI01000027_03660816_03671233.mRNA mRNA downstream 226759 3660816 ~ 3671515 (+) True CI01000027_03660816_03671233
TU157376 other upstream 1756987 1664408 ~ 1676860 (+) False G138515
TU157281 other upstream 1926031 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 2434666 995970 ~ 999181 (+) True G138290
TU157065 other upstream 2564272 855388 ~ 869575 (+) False G138247
TU157051 other upstream 2602164 829774 ~ 831683 (+) True G138238
TU157841 other downstream 50330 3484387 ~ 3486647 (+) True G138915
TU157886 other downstream 68015 3502072 ~ 3520065 (+) True G138953
TU159628 other downstream 1303341 4737398 ~ 4774262 (+) False G140436
TU159629 other downstream 1303341 4737398 ~ 4774262 (+) False G140436
TU159630 other downstream 1303341 4737398 ~ 4774262 (+) True G140436

Expression Profile