RNA id: TU157892


Basic Information

Item Value
RNA id TU157892
length 321
lncRNA type read_through
GC content 0.33
exon number 2
gene id G138959
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3447979 ~ 3503193 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTCTAGTAAGTCTAACCTCCACCATGGGTCATCTTGCACTTCAGTAGCAGTACAGGATCCATGTTCATAATGTGAGTCACGATTTCCATCAATAGCATTACTGGCATGACCATTTGCTGACCAAGGATTTCCAACCAGGTCCGACTGTGTGGCCTTGCCATATAAAGCGAGATTTTTGGCTAAATTGATAAAGCATAGTCAAAATGTGTAATAAAAACAAGGAAATGAATAAATCAAAATAATAATAATAATAATAATAAAACATTTGACCATATAATATTTCACTTTTGATTTCAATGATTATTTCTCAGGATTTATTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157867 lncRNA upstream 13922 3433847 ~ 3434057 (+) True G138934
TU157859 lncRNA upstream 29289 3418423 ~ 3418690 (+) True G138926
TU157858 lncRNA upstream 30031 3417684 ~ 3417948 (+) True G138925
TU157827 lncRNA upstream 127448 3319283 ~ 3320531 (+) True G138904
TU157807 lncRNA upstream 133147 3309830 ~ 3314832 (+) True G138884
TU157887 lncRNA downstream 4329 3507522 ~ 3514673 (+) True G138954
TU157893 lncRNA downstream 90409 3593602 ~ 3593743 (+) True G138960
TU157918 lncRNA downstream 122120 3625313 ~ 3625608 (+) True G138985
TU157936 lncRNA downstream 240816 3744009 ~ 3744238 (+) True G139002
TU157891 lncRNA downstream 284162 3787355 ~ 3787850 (+) True G138958
CI01000027_03421902_03436988.mRNA mRNA upstream 10763 3421828 ~ 3437216 (+) True CI01000027_03421902_03436988
CI01000027_03335011_03357910.mRNA mRNA upstream 89702 3335011 ~ 3358277 (+) True CI01000027_03335011_03357910
CI01000027_03278134_03279807.mRNA mRNA upstream 166957 3278134 ~ 3281022 (+) True CI01000027_03278134_03279807
CI01000027_03243374_03247133.mRNA mRNA upstream 200809 3243154 ~ 3247170 (+) True CI01000027_03243374_03247133
CI01000027_03233523_03240000.mRNA mRNA upstream 207977 3233523 ~ 3240002 (+) True CI01000027_03233523_03240000
CI01000027_03524553_03546701.mRNA mRNA downstream 20414 3523607 ~ 3546701 (+) True CI01000027_03524553_03546701
CI01000027_03570192_03600805.mRNA mRNA downstream 66999 3570192 ~ 3600805 (+) False CI01000027_03570192_03600805
CI01000027_03610825_03621755.mRNA mRNA downstream 107550 3610743 ~ 3621892 (+) True CI01000027_03610825_03621755
CI01000027_03660816_03671233.mRNA mRNA downstream 157623 3660816 ~ 3671515 (+) True CI01000027_03660816_03671233
CI01000027_03675758_03678539.mRNA mRNA downstream 172565 3675758 ~ 3678649 (+) True CI01000027_03675758_03678539
TU157376 other upstream 1771119 1664408 ~ 1676860 (+) False G138515
TU157281 other upstream 1940163 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 2448798 995970 ~ 999181 (+) True G138290
TU157065 other upstream 2578404 855388 ~ 869575 (+) False G138247
TU157051 other upstream 2616296 829774 ~ 831683 (+) True G138238
TU159628 other downstream 1234205 4737398 ~ 4774262 (+) False G140436
TU159629 other downstream 1234205 4737398 ~ 4774262 (+) False G140436
TU159630 other downstream 1234205 4737398 ~ 4774262 (+) True G140436
TU159637 other downstream 1277224 4780417 ~ 4784404 (+) False G140440
TU159638 other downstream 1277224 4780417 ~ 4784404 (+) False G140440

Expression Profile