RNA id: TU157841



Basic Information


Item Value
RNA id TU157841
length 1131
RNA type TUCP
GC content 0.48
exon number 2
gene id G138915
representative True

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3484387 ~ 3486647 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAGAAACCAAAACCTGATTTTATTCAAAAACACACCTTATTTCAATGAGATGCATATATTCATATCTGTAAATATTTACTATTTATTTACACACAAGGAAGAGAAAAATAGTTATGCACTAAAGTAACTGCATGATTCACTAAGTCTTATGGTCTTATGAGTTTATCAACCAGTCTTGAGAAAAAAGTTTTTCGTAACAACATGGACAGCACATCCATGAAACCTCACCCCGACTTATTGATAAAGGCGGGAAGAGAAGCGGCATAGGGGGAAAATTGAACACCATTGAAGCAGCATTACAGACTTGCCAGGACATGGCAGAACATGTTGTACTATTTCATTATTATTTTTTAAGTTTATTGTCATTTTTTTCTCTTTACTGTCCACAGACAATGTGGAGACATCGGAGTTCAGTTGGCAGCGTGTGCGGGTCCCTCAGGGATGAGAGAGGTGAAGAAAGTGCTGATGAACGACCACGCGGCCGACAGGAAGCCCGGCTGATGCGGGCCTGCGTTCATGGGATCTTCAGGACCTTCCTCCCCGCTGTCCCCCTCATCATCCTCCATCCCCTCATCCATCATACGCTCCTACAGAAAAACAAAAAGAAAAATCCTGATTTTGCTCAGCCTCGTCTTGTGGACCTTCTCCAGCTCTTGGATTCTGCAGTTCTGCTCTAAAGGGAAACCAGCCAGCCTGGTGCCTAAAGTCCACAAACACAGACAAACTATAAGACAATGAAGTGCAAATGCAATGTTAAACTTCCAAAAAGAACAATTCAGCTCATCAGGAAGCTTCTGTTTAGTATGTGACCTACAGATAAACCAGCAGCATGGCACCGATCACCATGACGAAGCGGCCGAAGGAGGAATAGAAATAGACGATGCTGAGCAGGATGGCGGCACGTGACACTGTGTACATCCAGTCCAGCCAGTCTCGGTTGAGCTCATCGTCGTTCAACATGGCTCCTCCCTGAGCGTTCATCTGGATGTTGGGGTTGGCAGGGCGGTCCTCAGGGGCGGGGTTGGGCCCCATAGGGGCTGCAGGTTCGTTAGGCTGAGCCGGCTGTGTGGCAGGGCCAGCGCTGGGAGTGGGAGAAGGGGCCGCACTGGACGCCCTGGAGGCTGCCATGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU157867 lncRNA upstream 50330 3433847 ~ 3434057 (+) True G138934
TU157859 lncRNA upstream 65697 3418423 ~ 3418690 (+) True G138926
TU157858 lncRNA upstream 66439 3417684 ~ 3417948 (+) True G138925
TU157827 lncRNA upstream 163856 3319283 ~ 3320531 (+) True G138904
TU157807 lncRNA upstream 169555 3309830 ~ 3314832 (+) True G138884
TU157850 lncRNA downstream 5785 3492432 ~ 3497919 (+) True G138918
TU157887 lncRNA downstream 20875 3507522 ~ 3514673 (+) True G138954
TU157893 lncRNA downstream 106955 3593602 ~ 3593743 (+) True G138960
TU157918 lncRNA downstream 138666 3625313 ~ 3625608 (+) True G138985
TU157936 lncRNA downstream 257362 3744009 ~ 3744238 (+) True G139002
CI01000027_03470743_03477848.mRNA mRNA upstream 4746 3470620 ~ 3479641 (+) True CI01000027_03470743_03477848
CI01000027_03421902_03436988.mRNA mRNA upstream 47171 3421828 ~ 3437216 (+) True CI01000027_03421902_03436988
CI01000027_03335011_03357910.mRNA mRNA upstream 126110 3335011 ~ 3358277 (+) True CI01000027_03335011_03357910
CI01000027_03278134_03279807.mRNA mRNA upstream 203365 3278134 ~ 3281022 (+) True CI01000027_03278134_03279807
CI01000027_03243374_03247133.mRNA mRNA upstream 237217 3243154 ~ 3247170 (+) True CI01000027_03243374_03247133
CI01000027_03524553_03546701.mRNA mRNA downstream 36960 3523607 ~ 3546701 (+) True CI01000027_03524553_03546701
CI01000027_03570192_03600805.mRNA mRNA downstream 83545 3570192 ~ 3600805 (+) False CI01000027_03570192_03600805
CI01000027_03610825_03621755.mRNA mRNA downstream 124096 3610743 ~ 3621892 (+) True CI01000027_03610825_03621755
CI01000027_03660816_03671233.mRNA mRNA downstream 174169 3660816 ~ 3671515 (+) True CI01000027_03660816_03671233
CI01000027_03675758_03678539.mRNA mRNA downstream 189111 3675758 ~ 3678649 (+) True CI01000027_03675758_03678539
TU157376 other upstream 1807527 1664408 ~ 1676860 (+) False G138515
TU157281 other upstream 1976571 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 2485206 995970 ~ 999181 (+) True G138290
TU157065 other upstream 2614812 855388 ~ 869575 (+) False G138247
TU157051 other upstream 2652704 829774 ~ 831683 (+) True G138238
TU157886 other downstream 15425 3502072 ~ 3520065 (+) True G138953
TU159628 other downstream 1250751 4737398 ~ 4774262 (+) False G140436
TU159629 other downstream 1250751 4737398 ~ 4774262 (+) False G140436
TU159630 other downstream 1250751 4737398 ~ 4774262 (+) True G140436
TU159637 other downstream 1293770 4780417 ~ 4784404 (+) False G140440

Expression Profile