RNA id: TU159340



Basic Information


Item Value
RNA id TU159340
length 218
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G140200
representative True

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3691470 ~ 3691687 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CAAAATATGACCTAGGGCGATCATATGTTTTGTCAAACAGTAAATATATTAACCAATGCGTTGAAAACCAACAAGATATCTGTCAAATTTCGATAGCTTTCAGGCATTCTGTGCACAAGATTTGCATCCCATGCAACACCGCAGTTTTGCATTAATGTAATTGTGGCCGAACTGATGCTCTTGGATTTTTTTTCTTTTTTAAACAACCATTAAATGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU159312 lncRNA downstream 625 3690173 ~ 3690845 (-) True CI01000027_03689861_03690969
TU159339 lncRNA downstream 19227 3671941 ~ 3672243 (-) True G140199
TU159337 lncRNA downstream 19961 3670219 ~ 3671509 (-) True G140197
TU159323 lncRNA downstream 48245 3642946 ~ 3643225 (-) True G140183
TU159316 lncRNA downstream 68823 3622422 ~ 3622647 (-) True G140176
TU159341 lncRNA upstream 405 3692092 ~ 3692459 (-) True G140201
TU159342 lncRNA upstream 1187 3692874 ~ 3693219 (-) True G140202
TU159343 lncRNA upstream 4977 3696664 ~ 3697044 (-) True G140203
TU159344 lncRNA upstream 5530 3697217 ~ 3697469 (-) True G140204
TU159345 lncRNA upstream 6192 3697879 ~ 3698252 (-) True G140205
CI01000027_03689861_03690969.mRNA mRNA downstream 259 3689439 ~ 3691211 (-) False CI01000027_03689861_03690969
CI01000027_03513546_03521352.mRNA mRNA downstream 170118 3513501 ~ 3521352 (-) False CI01000027_03513546_03521352
CI01000027_03501726_03510058.mRNA mRNA downstream 181412 3501120 ~ 3510058 (-) False CI01000027_03501726_03510058
CI01000027_03492624_03493292.mRNA mRNA downstream 198178 3492500 ~ 3493292 (-) True CI01000027_03492624_03493292
CI01000027_03484797_03490716.mRNA mRNA downstream 200517 3484742 ~ 3490953 (-) True CI01000027_03484797_03490716
CI01000027_03694455_03710634.mRNA mRNA upstream 2540 3694227 ~ 3711039 (-) True CI01000027_03694455_03710634
CI01000027_03750919_03761043.mRNA mRNA upstream 59143 3750830 ~ 3761063 (-) True CI01000027_03750919_03761043
CI01000027_03787377_03788902.mRNA mRNA upstream 95690 3787377 ~ 3790279 (-) False CI01000027_03787377_03788902
CI01000027_03832200_03836030.mRNA mRNA upstream 139518 3831205 ~ 3836530 (-) True CI01000027_03832200_03836030
CI01000027_03898513_03905519.mRNA mRNA upstream 205579 3897266 ~ 3906494 (-) True CI01000027_03898513_03905519
TU159241 other downstream 106791 3510282 ~ 3584679 (-) False G140118
TU159249 other downstream 106791 3512060 ~ 3584679 (-) True G140118
TU159244 other downstream 106791 3509352 ~ 3584679 (-) True G140118
TU158517 other downstream 1463445 2227919 ~ 2228025 (-) True G139484
TU158538 other downstream 1565442 2125857 ~ 2126028 (-) True G139505
TU159398 other upstream 95691 3787378 ~ 3789222 (-) True CI01000027_03787377_03788902
TU159388 other upstream 230709 3922396 ~ 3925572 (-) True CI01000027_03922380_03931033
TU160765 other upstream 680560 4372247 ~ 4412810 (-) False G141481
TU160760 other upstream 713265 4404952 ~ 4412810 (-) True G141481
TU160774 other upstream 815788 4507475 ~ 4508971 (-) True G141488

Expression Profile