RNA id: TU159545


Basic Information

Item Value
RNA id TU159545
length 263
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G140363
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4106903 ~ 4107518 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTAGAGCCATTTAGAAGGCACCAGGCTATAGAAAACTCTTGCAGTTGTAAAACTGTTTATGCTTACACAGCTCAAACAGTCTGACTAAAGTCCAGACGTAACAACAACAACAACAACAAAAGTGCATTGTTAGTATTTTTGTCTTAAAGGGATAGTTCACCCAAAAATGAAAATTTGATGTTTATCTGCTTACCCCCAGGGCATCCAAGATGTAGGTGACTTTGTTTCTTCAGTAGAACACAAATGATGATTTTTAACTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159485 lncRNA downstream 70023 3998688 ~ 4036880 (-) True G140308
TU159483 lncRNA downstream 106057 3998688 ~ 4000846 (-) False G140308
TU159432 lncRNA downstream 237032 3869467 ~ 3869871 (-) True G140268
TU159431 lncRNA downstream 257261 3849360 ~ 3849642 (-) True G140267
TU159383 lncRNA downstream 282465 3823904 ~ 3824438 (-) True G140237
TU159552 lncRNA upstream 5078 4112596 ~ 4112829 (-) True G140370
TU160678 lncRNA upstream 12802 4120320 ~ 4120527 (-) True G141402
TU160681 lncRNA upstream 14803 4122321 ~ 4123420 (-) True G141405
TU160697 lncRNA upstream 50836 4158354 ~ 4158602 (-) True G141421
TU160705 lncRNA upstream 60874 4168392 ~ 4168706 (-) True G141429
CI01000027_04039778_04040714.mRNA mRNA downstream 66189 4039109 ~ 4040714 (-) True CI01000027_04039778_04040714
CI01000027_04008272_04011121.mRNA mRNA downstream 94281 4008180 ~ 4012622 (-) True CI01000027_04008272_04011121
CI01000027_03969492_03973741.mRNA mRNA downstream 132727 3968698 ~ 3974176 (-) True CI01000027_03969492_03973741
CI01000027_03922380_03931033.mRNA mRNA downstream 175870 3922242 ~ 3931033 (-) False CI01000027_03922380_03931033
CI01000027_03898513_03905519.mRNA mRNA downstream 200409 3897266 ~ 3906494 (-) True CI01000027_03898513_03905519
CI01000027_04156256_04198063.mRNA mRNA upstream 48738 4156256 ~ 4198063 (-) True CI01000027_04156256_04198063
CI01000027_04206424_04209369.mRNA mRNA upstream 98092 4205610 ~ 4209380 (-) False CI01000027_04206424_04209369
CI01000027_04233680_04249553.mRNA mRNA upstream 126124 4233642 ~ 4249553 (-) True CI01000027_04233680_04249553
CI01000027_04254645_04264857.mRNA mRNA upstream 146649 4254167 ~ 4264857 (-) True CI01000027_04254645_04264857
CI01000027_04324807_04339354.mRNA mRNA upstream 217158 4324676 ~ 4339354 (-) True CI01000027_04324807_04339354
TU159388 other downstream 181331 3922396 ~ 3925572 (-) True CI01000027_03922380_03931033
TU159398 other downstream 317681 3787378 ~ 3789222 (-) True CI01000027_03787377_03788902
TU159241 other downstream 522224 3510282 ~ 3584679 (-) False G140118
TU160765 other upstream 264729 4372247 ~ 4412810 (-) False G141481
TU160760 other upstream 297434 4404952 ~ 4412810 (-) True G141481
TU160774 other upstream 399957 4507475 ~ 4508971 (-) True G141488
TU161047 other upstream 769549 4877067 ~ 4877766 (-) True G141728
TU160890 other upstream 1000817 5108335 ~ 5201155 (-) True G141588

Expression Profile