RNA id: TU159574


Basic Information

Item Value
RNA id TU159574
length 238
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id G140392
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4170063 ~ 4174661 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGAGTTGAGTTGCTGAGTGTATGTTTCTGGCAGGGATGGAGTAGGTCCCTCCACAATCTTCAGCACCACAGCCAAGAAGTTCTGCCCCTCAAAAGCATGCACCAAACAGCACATCTCATAGAGGATACAGCCTAAAGACCAGATGTCTGATTTGGAGTCGTATCCTCTGTGGCTGAGGGCTTCAGGGCTCATGTAGTACGGGGTACCTGTGAAGGTAGTCGCCAGGTCACATGACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159573 lncRNA upstream 1428 4168409 ~ 4168635 (+) True G140391
TU159568 lncRNA upstream 23269 4146488 ~ 4146794 (+) True G140386
TU159566 lncRNA upstream 29635 4139939 ~ 4140428 (+) True G140384
TU159563 lncRNA upstream 36994 4132838 ~ 4133069 (+) True G140381
TU157957 lncRNA upstream 304546 3865013 ~ 3865517 (+) True G139023
TU159576 lncRNA downstream 243 4174904 ~ 4175345 (+) True G140394
TU159591 lncRNA downstream 35538 4210199 ~ 4210431 (+) True G140408
TU159683 lncRNA downstream 146729 4321390 ~ 4321592 (+) True G140482
TU159690 lncRNA downstream 187388 4362049 ~ 4362257 (+) True G140489
TU159692 lncRNA downstream 226828 4401489 ~ 4403088 (+) True G140490
CI01000027_04054186_04103227.mRNA mRNA upstream 65643 4053038 ~ 4104420 (+) True CI01000027_04054186_04103227
CI01000027_04015806_04037491.mRNA mRNA upstream 131289 4015730 ~ 4038774 (+) True CI01000027_04015806_04037491
CI01000027_04012798_04014351.mRNA mRNA upstream 155712 4012747 ~ 4014351 (+) True CI01000027_04012798_04014351
CI01000027_03998691_04000730.mRNA mRNA upstream 169229 3998168 ~ 4000834 (+) True CI01000027_03998691_04000730
CI01000027_03976548_03994948.mRNA mRNA upstream 175035 3975433 ~ 3995028 (+) True CI01000027_03976548_03994948
CI01000027_04213570_04229519.mRNA mRNA downstream 37837 4212498 ~ 4229677 (+) True CI01000027_04213570_04229519
CI01000027_04350540_04357555.mRNA mRNA downstream 175353 4350014 ~ 4358099 (+) True CI01000027_04350540_04357555
CI01000027_04381523_04393547.mRNA mRNA downstream 206862 4381523 ~ 4394114 (+) True CI01000027_04381523_04393547
CI01000027_04470309_04483532.mRNA mRNA downstream 295484 4470145 ~ 4483559 (+) True CI01000027_04470309_04483532
CI01000027_04485614_04488056.mRNA mRNA downstream 309230 4483891 ~ 4488056 (+) True CI01000027_04485614_04488056
TU157886 other upstream 649998 3502072 ~ 3520065 (+) True G138953
TU157841 other upstream 683416 3484387 ~ 3486647 (+) True G138915
TU157376 other upstream 2493203 1664408 ~ 1676860 (+) False G138515
TU157281 other upstream 2662247 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 3170882 995970 ~ 999181 (+) True G138290
TU159628 other downstream 562737 4737398 ~ 4774262 (+) False G140436
TU159629 other downstream 562737 4737398 ~ 4774262 (+) False G140436
TU159630 other downstream 562737 4737398 ~ 4774262 (+) True G140436
TU159637 other downstream 605756 4780417 ~ 4784404 (+) False G140440
TU159638 other downstream 605756 4780417 ~ 4784404 (+) False G140440

Expression Profile