RNA id: TU159666


Basic Information

Item Value
RNA id TU159666
length 258
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G140465
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4428037 ~ 4430693 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTGATTTGTTGGATCCTTCAGCTCTTTAACATCCATGTCTGCCGAGAAAAAAATGGTTCCTAGTCCTAGAAGAATGACAGCTGCAAGGATGCACTTGTTCAAAGAAAAGACTGTTTCCTCCTCTCTTTGAGGGGGCTGAAAGTCTTCCTCCTCTTCCTCTTCATCATCATCTGCCTCAGTCTTGTCCAAAGAGCTCAGGTGGGAGATTTTTCTCTTTCGTAAACCATCCCACTCCTTCCTGTTTGTCTCTAACACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159697 lncRNA upstream 13461 4414354 ~ 4414576 (+) True G140495
TU159648 lncRNA upstream 14968 4404326 ~ 4413069 (+) True G140447
TU159692 lncRNA upstream 24949 4401489 ~ 4403088 (+) True G140490
TU159690 lncRNA upstream 65780 4362049 ~ 4362257 (+) True G140489
TU159683 lncRNA upstream 106445 4321390 ~ 4321592 (+) True G140482
TU159712 lncRNA downstream 74161 4504854 ~ 4505152 (+) True G140509
TU159715 lncRNA downstream 82717 4513410 ~ 4513585 (+) True G140512
TU159725 lncRNA downstream 240414 4671107 ~ 4671477 (+) True G140522
TU159794 lncRNA downstream 261441 4692134 ~ 4692704 (+) True G140587
TU159803 lncRNA downstream 277532 4708225 ~ 4708506 (+) True G140596
CI01000027_04381523_04393547.mRNA mRNA upstream 33923 4381523 ~ 4394114 (+) True CI01000027_04381523_04393547
CI01000027_04350540_04357555.mRNA mRNA upstream 69938 4350014 ~ 4358099 (+) True CI01000027_04350540_04357555
CI01000027_04213570_04229519.mRNA mRNA upstream 198360 4212498 ~ 4229677 (+) True CI01000027_04213570_04229519
CI01000027_04054186_04103227.mRNA mRNA upstream 323617 4053038 ~ 4104420 (+) True CI01000027_04054186_04103227
CI01000027_04015806_04037491.mRNA mRNA upstream 389263 4015730 ~ 4038774 (+) True CI01000027_04015806_04037491
CI01000027_04470309_04483532.mRNA mRNA downstream 39452 4470145 ~ 4483559 (+) True CI01000027_04470309_04483532
CI01000027_04485614_04488056.mRNA mRNA downstream 53198 4483891 ~ 4488056 (+) True CI01000027_04485614_04488056
CI01000027_04488278_04495470.mRNA mRNA downstream 57585 4488278 ~ 4496077 (+) True CI01000027_04488278_04495470
CI01000027_04497623_04499224.mRNA mRNA downstream 66930 4497623 ~ 4499348 (+) True CI01000027_04497623_04499224
CI01000027_04537765_04549872.mRNA mRNA downstream 106649 4537342 ~ 4549929 (+) True CI01000027_04537765_04549872
TU157886 other upstream 907972 3502072 ~ 3520065 (+) True G138953
TU157841 other upstream 941390 3484387 ~ 3486647 (+) True G138915
TU157376 other upstream 2751177 1664408 ~ 1676860 (+) False G138515
TU157281 other upstream 2920221 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 3428856 995970 ~ 999181 (+) True G138290
TU159628 other downstream 306705 4737398 ~ 4774262 (+) False G140436
TU159629 other downstream 306705 4737398 ~ 4774262 (+) False G140436
TU159630 other downstream 306705 4737398 ~ 4774262 (+) True G140436
TU159637 other downstream 349724 4780417 ~ 4784404 (+) False G140440
TU159638 other downstream 349724 4780417 ~ 4784404 (+) False G140440

Expression Profile