RNA id: TU159725


Basic Information

Item Value
RNA id TU159725
length 371
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G140522
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4671107 ~ 4671477 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAAATCCTCTCTCTCAGATTTTTTGAGGACCTCTGGCACCCTCTTGTTGGGTCCCTGGGGGCCCTCGGATTCCACTTTGAAAACATCTGCTCTAAATCATTGTTTTTCAACCTGAGTGCTGTCTGATGCAAAAGGGGTCTGTAAAATGATTTTAAATAGAATGTCTGCTTAATATGTCATATGTATATTCTGACGTGTAACCTGTTCCCATAAAAATGAAGAACTGACAATATAACAAAAGATTAGACAAGTCACTTCAGAACGCGTGATTTGTTTTCCAATTTCAGCTAGCAAACGATAAAAATCAGCCAATCAGAATCCACCCGAGTTTAAACGTAGGCATTTAAAAGGGTGCACAAGATGCAGGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159715 lncRNA upstream 157522 4513410 ~ 4513585 (+) True G140512
TU159712 lncRNA upstream 165955 4504854 ~ 4505152 (+) True G140509
TU159666 lncRNA upstream 240414 4428037 ~ 4430693 (+) True G140465
TU159697 lncRNA upstream 256531 4414354 ~ 4414576 (+) True G140495
TU159648 lncRNA upstream 258038 4404326 ~ 4413069 (+) True G140447
TU159794 lncRNA downstream 20657 4692134 ~ 4692704 (+) True G140587
TU159803 lncRNA downstream 36748 4708225 ~ 4708506 (+) True G140596
TU159804 lncRNA downstream 37311 4708788 ~ 4708995 (+) True G140597
TU159656 lncRNA downstream 62231 4733708 ~ 4736668 (+) True G140455
TU159625 lncRNA downstream 65417 4736894 ~ 4812799 (+) False G140435
CI01000027_04655825_04667764.mRNA mRNA upstream 3240 4654783 ~ 4667867 (+) True CI01000027_04655825_04667764
CI01000027_04551022_04551875.mRNA mRNA upstream 119114 4550712 ~ 4551993 (+) True CI01000027_04551022_04551875
CI01000027_04537765_04549872.mRNA mRNA upstream 121178 4537342 ~ 4549929 (+) True CI01000027_04537765_04549872
CI01000027_04497623_04499224.mRNA mRNA upstream 171759 4497623 ~ 4499348 (+) True CI01000027_04497623_04499224
CI01000027_04488278_04495470.mRNA mRNA upstream 175030 4488278 ~ 4496077 (+) True CI01000027_04488278_04495470
CI01000027_04713891_04717190.mRNA mRNA downstream 42303 4713780 ~ 4717359 (+) True CI01000027_04713891_04717190
CI01000027_04725469_04727486.mRNA mRNA downstream 52416 4723893 ~ 4728283 (+) True CI01000027_04725469_04727486
CI01000027_04768212_04770488.mRNA mRNA downstream 96735 4768212 ~ 4770687 (+) True CI01000027_04768212_04770488
CI01000027_04774573_04774740.mRNA mRNA downstream 103096 4774573 ~ 4774978 (+) False CI01000027_04774573_04774740
CI01000027_04777135_04777760.mRNA mRNA downstream 105010 4776487 ~ 4779313 (+) False CI01000027_04777135_04777760
TU157886 other upstream 1151042 3502072 ~ 3520065 (+) True G138953
TU157841 other upstream 1184460 3484387 ~ 3486647 (+) True G138915
TU157376 other upstream 2994247 1664408 ~ 1676860 (+) False G138515
TU157281 other upstream 3163291 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 3671926 995970 ~ 999181 (+) True G138290
TU159628 other downstream 65921 4737398 ~ 4774262 (+) False G140436
TU159629 other downstream 65921 4737398 ~ 4774262 (+) False G140436
TU159630 other downstream 65921 4737398 ~ 4774262 (+) True G140436
TU159637 other downstream 108940 4780417 ~ 4784404 (+) False G140440
TU159638 other downstream 108940 4780417 ~ 4784404 (+) False G140440

Expression Profile