RNA id: TU159625


Basic Information

Item Value
RNA id TU159625
length 313
lncRNA type read_through
GC content 0.36
exon number 2
gene id G140435
representative False

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4736894 ~ 4822645 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGCTATTAGGTAAAAGCCAAGACAAGGCAGCTCTGGACAAGATATTTAAGGATCTGGATGCAAACGCTGATGGCGCTGTGGACTTCCAGGAGTACGTCACCCTGATCGCCTGCATCACTATGCTTTGCAATGATTTTTTTACTAAAAAATAACTTTGTCCTTACAGAAAGTTTTTGTCTGTAAAGTTATGGTACATCTGGAAAAAATAAAATAAAATAAAGGTTTTTAATGTTTTGAATTAAAACTGTATTCTTACAATATGTGGGTGTGAGTTTTCTTATCAGTAAATGTGTGTTTATGGTGTTTGTGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159656 lncRNA upstream 226 4733708 ~ 4736668 (+) True G140455
TU159804 lncRNA upstream 27899 4708788 ~ 4708995 (+) True G140597
TU159803 lncRNA upstream 28388 4708225 ~ 4708506 (+) True G140596
TU159794 lncRNA upstream 44190 4692134 ~ 4692704 (+) True G140587
TU159725 lncRNA upstream 65417 4671107 ~ 4671477 (+) True G140522
TU159676 lncRNA downstream 12141 4824940 ~ 4825988 (+) True G140475
TU159840 lncRNA downstream 20213 4833012 ~ 4833260 (+) True G140633
TU159655 lncRNA downstream 60316 4873115 ~ 4874023 (+) True G140454
TU159847 lncRNA downstream 69281 4882080 ~ 4882366 (+) True G140640
TU159848 lncRNA downstream 69780 4882579 ~ 4882895 (+) True G140641
CI01000027_04725469_04727486.mRNA mRNA upstream 8611 4723893 ~ 4728283 (+) True CI01000027_04725469_04727486
CI01000027_04713891_04717190.mRNA mRNA upstream 19535 4713780 ~ 4717359 (+) True CI01000027_04713891_04717190
CI01000027_04655825_04667764.mRNA mRNA upstream 69027 4654783 ~ 4667867 (+) True CI01000027_04655825_04667764
CI01000027_04551022_04551875.mRNA mRNA upstream 184901 4550712 ~ 4551993 (+) True CI01000027_04551022_04551875
CI01000027_04537765_04549872.mRNA mRNA upstream 186965 4537342 ~ 4549929 (+) True CI01000027_04537765_04549872
CI01000027_04835989_04851147.mRNA mRNA downstream 23190 4835989 ~ 4851178 (+) True CI01000027_04835989_04851147
CI01000027_04860802_04872130.mRNA mRNA downstream 48003 4860802 ~ 4872566 (+) True CI01000027_04860802_04872130
CI01000027_04887494_04956477.mRNA mRNA downstream 74517 4887316 ~ 4957488 (+) True CI01000027_04887494_04956477
CI01000027_04978217_04987503.mRNA mRNA downstream 165418 4978217 ~ 4987503 (+) False CI01000027_04978217_04987503
CI01000027_05018992_05033275.mRNA mRNA downstream 205461 5018260 ~ 5034290 (+) True CI01000027_05018992_05033275
TU157886 other upstream 1216829 3502072 ~ 3520065 (+) True G138953
TU157841 other upstream 1250247 3484387 ~ 3486647 (+) True G138915
TU157376 other upstream 3060034 1664408 ~ 1676860 (+) False G138515
TU157281 other upstream 3229078 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 3737713 995970 ~ 999181 (+) True G138290
TU159892 other downstream 236124 5048923 ~ 5055939 (+) True G140682
TU159886 other downstream 256553 5069352 ~ 5070868 (+) True CI01000027_05069310_05070638
TU159891 other downstream 259263 5072377 ~ 5072419 (+) True G140681
TU160081 other downstream 899813 5712612 ~ 5712702 (+) True G140862
TU160140 other downstream 944183 5757776 ~ 5757799 (+) True G140921

Expression Profile