RNA id: TU159623


Basic Information

Item Value
RNA id TU159623
length 470
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G140435
representative False

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4736894 ~ 4822645 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTAATAAATATGGGCCGTGTGATTCTTCACTGTACTGATTGTGTCTCTGATTATGCTTTTGTGTGTGTTGTGCTTATTAAAGAAAAGCCAAGACAAGGCAGCTCTGGACAAGATATTTAAGGATCTGGATGCAAACGCTGATGGCGCTGTGGACTTCCAGGAGTACGTCACCCTGATCGCCTGCATCACTATGCTTTGCAATGATTTTTTTACTAAAAAATAACTTTGTCCTTACAGAAAGTTTTTGTCTGTAAAGTTATGGTACATCTGGATGCAAACGCTGATGGCGCTGTGGACTTCCAGGAGTACGTCACCCTGGTCGCCTGCATCACTATGCTTTGCAATGATTCTTTAAAAAAAGGGTATATAACCTAACAGAAATGTTTTATCTGTAAAGTTATGGTATATCTAAAAAAAAAAAAAGTTTTTTTTTAATGTTTTGAATTAAAACTATTCTTACAATATGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159627 lncRNA upstream 33078 4777204 ~ 4779338 (+) False CI01000027_04777135_04777760
TU159656 lncRNA upstream 75748 4733708 ~ 4736668 (+) True G140455
TU159804 lncRNA upstream 103421 4708788 ~ 4708995 (+) True G140597
TU159803 lncRNA upstream 103910 4708225 ~ 4708506 (+) True G140596
TU159794 lncRNA upstream 119712 4692134 ~ 4692704 (+) True G140587
TU159676 lncRNA downstream 2295 4824940 ~ 4825988 (+) True G140475
TU159840 lncRNA downstream 10367 4833012 ~ 4833260 (+) True G140633
TU159655 lncRNA downstream 50470 4873115 ~ 4874023 (+) True G140454
TU159847 lncRNA downstream 59435 4882080 ~ 4882366 (+) True G140640
TU159848 lncRNA downstream 59934 4882579 ~ 4882895 (+) True G140641
CI01000027_04777135_04777760.mRNA mRNA upstream 33103 4776487 ~ 4779313 (+) False CI01000027_04777135_04777760
CI01000027_04774573_04774740.mRNA mRNA upstream 37438 4774573 ~ 4774978 (+) False CI01000027_04774573_04774740
CI01000027_04768212_04770488.mRNA mRNA upstream 41729 4768212 ~ 4770687 (+) True CI01000027_04768212_04770488
CI01000027_04725469_04727486.mRNA mRNA upstream 84133 4723893 ~ 4728283 (+) True CI01000027_04725469_04727486
CI01000027_04713891_04717190.mRNA mRNA upstream 95057 4713780 ~ 4717359 (+) True CI01000027_04713891_04717190
CI01000027_04835989_04851147.mRNA mRNA downstream 13344 4835989 ~ 4851178 (+) True CI01000027_04835989_04851147
CI01000027_04860802_04872130.mRNA mRNA downstream 38157 4860802 ~ 4872566 (+) True CI01000027_04860802_04872130
CI01000027_04887494_04956477.mRNA mRNA downstream 64671 4887316 ~ 4957488 (+) True CI01000027_04887494_04956477
CI01000027_04978217_04987503.mRNA mRNA downstream 155572 4978217 ~ 4987503 (+) False CI01000027_04978217_04987503
CI01000027_05018992_05033275.mRNA mRNA downstream 195615 5018260 ~ 5034290 (+) True CI01000027_05018992_05033275
TU159641 other upstream 26756 4780417 ~ 4785660 (+) False G140440
TU159637 other upstream 28012 4780417 ~ 4784404 (+) False G140440
TU159638 other upstream 28012 4780417 ~ 4784404 (+) False G140440
TU159640 other upstream 28012 4782442 ~ 4784404 (+) True G140440
TU159628 other upstream 33078 4737398 ~ 4774262 (+) False G140436
TU159892 other downstream 226278 5048923 ~ 5055939 (+) True G140682
TU159886 other downstream 246707 5069352 ~ 5070868 (+) True CI01000027_05069310_05070638
TU159891 other downstream 249417 5072377 ~ 5072419 (+) True G140681
TU160081 other downstream 889967 5712612 ~ 5712702 (+) True G140862
TU160140 other downstream 934337 5757776 ~ 5757799 (+) True G140921

Expression Profile